signif_genes = sel_cv[sel_cv$qglobal_cv<0.1, c("gene_name","qglobal_cv")] error

[HendrinaS]

Hi, could you please help with the following issue,

I keep getting an error when I run the flooring script signif_genes = sel_cv[sel_cv$qglobal_cv<0.1, c("gene_name","qglobal_cv")],. I don't know what it means, could you please explain to me on how to solve this?

my columns headings are as follow;
sampleID chr pos ref alt geneID
1 PD39448a 1 11883839 C G CLCN6
2 PD39448a 1 16736168 A G SPATA21

should I change the geneId column to gene_name?

[im3sanger]

Dear Hendrina,

Thank you for this question and your other question sent by email. I have replied to you by email.

Best,
Inigo