argument 3 matches multiple formal arguments

[Guliariel]

Hello I am trying to runHArmony for a merged Seurat object (scATAC-like data).
I am using this command:
MYSEURATOBJ <- RunHarmony(object = MYSEURATOBJ, group.by.vars = 'dataset', reduction = 'lsi', assay.use = 'bins', project.dim = FALSE).

I receive this error: argument 3 matches multiple formal arguments

I would appreciate your suggestion how to solve this issue.
Thank you

[pati-ni]

There are two different arguments, reduction.use and reduction.save and this is the reason you are getting this error. You need to reduction.use='lsi'

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On Thu, Aug 15, 2024, 20:02 Guliariel ***@***.***> wrote: Hello I am trying to runHArmony for a merged Seurat object (scATAC-like data). I am using this command: MYSEURATOBJ <- RunHarmony(object = MYSEURATOBJ, group.by.vars = 'dataset', reduction = 'lsi', assay.use = 'bins', project.dim = FALSE). I receive this error: argument 3 matches multiple formal arguments I would appreciate your suggestion how to solve this issue. Thank you — Reply to this email directly, view it on GitHub <#255>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ADSFW2HGSGC7RJI3YVD5VQLZRTNJJAVCNFSM6AAAAABMSRTFKCVHI2DSMVQWIX3LMV43ASLTON2WKOZSGQ3DQNBZGQYDANQ> . You are receiving this because you are subscribed to this thread.Message ID: ***@***.***>