insilico/privateEC

Remove reference to csv file.

Opened this issue · 6 comments

"ARF_compare_1_multisurf_0.8_bias_No_k_0.1_pct.signals_1000_num.attr_100_num.samp.csv" cannot be found.

Where does this error occur?

Saeid reported this to me. It may not be an issue. I will find out more. I this this file is mentioned as an example in the documentation of a function, but I'm not sure in a vignette or anything.

Maybe he tried to follow this example usage in convert.pec.to.inbix. Most people don't need this function, but I used it for comparing with inbix.

infile <- "ARF_compare_1_multisurf_0.8_bias_No_k_0.1_pct.signals_1000_num.attr_100_num.samp.csv"
convert.pec.sim.to.inbix(infile,"simulated1")

Where is the file that contains this code? Can we replace with an example data file?

In the next update, I will change the usage to include a command that first simulates a dataset instead of specifying a file. That would be more general and useful anyway. Also in the next update, I want to incorporate a cholesky option for creating correlation and interactions. The code is written it just needs to be carefully engineered into simulation.R.

All sound wonderful! Thank you!