Building Cython modules fails in Ubuntu
okahilak opened this issue · 3 comments
okahilak commented
After commit 80fe768, running python3 setup.py build_ext --inplace seems to fail with the following error:
[1/5] Cythonizing invesalius_cy/cy_mesh.pyx
Error compiling Cython file:
------------------------------------------------------------
...
pd.SetPoints(points)
pd.SetPolys(triangles)
return pd
cdef vector[vertex_id_t]* get_faces_by_vertex(self, int v_id) noexcept nogil:
^
------------------------------------------------------------
invesalius_cy/cy_mesh.pyx:143:66: Syntax error in C variable declaration
Traceback (most recent call last):
File "/home/mtms/mtms/ros2_ws/src/neuronavigation/neuronavigation/invesalius3/setup.py", line 76, in <module>
ext_modules=cythonize(
File "/usr/lib/python3/dist-packages/Cython/Build/Dependencies.py", line 1127, in cythonize
cythonize_one(*args)
File "/usr/lib/python3/dist-packages/Cython/Build/Dependencies.py", line 1250, in cythonize_one
raise CompileError(None, pyx_file)
Cython.Compiler.Errors.CompileError: invesalius_cy/cy_mesh.pyx
I'm using Ubuntu 22.04.3 LTS. I installed Cython by running: sudo apt-get install -y cython3.
Running cython3 --version returns:
Cython version 0.29.28
sotodela commented
@tfmoraes Hi, we got this problem while trying to build InVesalius in Ubuntu 22.04. Would you be able to check it out?
Thanks!
tfmoraes commented