Fail to generate pdf using huskydown template

Question

Fail to generate pdf using huskydown template

AFSobral opened this issue 4 years ago · 2 comments

Hi Chester,
Thank you for providing thesis down!
I am coming to you since I saw you helped solve a similar problem recently in another template generated from thesis down.
I am having a similar error when trying to render huskydown template to pdf, I created an issue, but had no reply:
https://github.com/benmarwick/huskydown/issues/18

When I try to render index.Rmd file I get the following:

processing file: thesis.Rmd
|... | 5%
ordinary text without R code

|....... | 10%
label: include_packages (with options)
List of 1
$ include: logi FALSE

|.......... | 14%
ordinary text without R code

|............. | 19%
label: load (with options)
List of 1
$ echo: logi FALSE

|................. | 24%
ordinary text without R code

|.................... | 29%
label: str
|....................... | 33%
ordinary text without R code

|........................... | 38%
label: load_pkgs (with options)
List of 2
$ echo : logi FALSE
$ message: logi FALSE

|.............................. | 43%
ordinary text without R code

|................................. | 48%
label: speciesinfo (with options)
List of 2
$ echo : logi FALSE
$ results: chr "asis"

|..................................... | 52%
ordinary text without R code

|........................................ | 57%
label: include_packages_2 (with options)
List of 1
$ include: logi FALSE

|........................................... | 62%
inline R code fragments

|............................................... | 67%
label: unnamed-chunk-1 (with options)
List of 3
$ ref.label: chr "include_packages"
$ results : chr "hide"
$ echo : logi TRUE

|.................................................. | 71%
ordinary text without R code

|..................................................... | 76%
label: unnamed-chunk-2 (with options)
List of 3
$ ref.label: chr "include_packages_2"
$ results : chr "hide"
$ echo : logi TRUE

|......................................................... | 81%
inline R code fragments

|............................................................ | 86%
label: unnamed-chunk-3 (with options)
List of 2
$ echo: logi FALSE
$ eval: logi FALSE

|............................................................... | 90%
ordinary text without R code

|................................................................... | 95%
label: unnamed-chunk-4 (with options)
List of 1
$ echo: logi FALSE

|......................................................................| 100%
ordinary text without R code

/Applications/RStudio.app/Contents/MacOS/pandoc/pandoc +RTS -K512m -RTS thesis.utf8.md --to latex --from markdown+autolink_bare_uris+tex_math_single_backslash --output thesis.tex --lua-filter /Library/Frameworks/R.framework/Versions/4.0/Resources/library/bookdown/rmarkdown/lua/custom-environment.lua --lua-filter /Library/Frameworks/R.framework/Versions/4.0/Resources/library/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /Library/Frameworks/R.framework/Versions/4.0/Resources/library/rmarkdown/rmarkdown/lua/latex-div.lua --metadata-file /var/folders/nf/myc19xfn73z5hkt484xs3xk80000gn/T//RtmpWNFaC3/filee8fc4afe9c74 --self-contained --table-of-contents --toc-depth 3 --template template.tex --number-sections --highlight-style tango --pdf-engine pdflatex --wrap preserve --top-level-division=chapter --include-in-header /var/folders/nf/myc19xfn73z5hkt484xs3xk80000gn/T//RtmpWNFaC3/rmarkdown-stre8fc6a593530.html --variable tables=yes --standalone -Mhas-frontmatter=false --citeproc
output file: thesis.knit.md

This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020) (preloaded format=pdflatex)
restricted \write18 enabled.
entering extended mode
! Emergency stop.
<read *>

Error: LaTeX failed to compile thesis.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See thesis.log for more info.
In addition: Warning message:
replacing previous import ‘dplyr::pull’ by ‘git2r::pull’ when loading ‘huskydown’
Execution halted

Thesis.log as the following info:

XeTeX is required to compile this document.
Sorry!

! Emergency stop.
<read *>

l.10 \RequireXeTeX

Here is how much of TeX's memory you used:
3330 strings out of 480608
42827 string characters out of 5903630
285571 words of memory out of 5000000
19191 multiletter control sequences out of 15000+600000
532636 words of font info for 25 fonts, out of 8000000 for 9000
1141 hyphenation exceptions out of 8191
38i,0n,49p,921b,36s stack positions out of 5000i,500n,10000p,200000b,80000s

! ==> Fatal error occurred, no output PDF file produced!

Session info:

xfun::session_info('rmarkdown')
R version 4.0.4 (2021-02-15)
Platform: x86_64-apple-darwin17.0 (64-bit)
Running under: macOS Big Sur 10.16, RStudio 1.4.1106

Locale: en_US.UTF-8 / en_US.UTF-8 / en_US.UTF-8 / C / en_US.UTF-8 / en_US.UTF-8

Package version:
base64enc_0.1.3 digest_0.6.27 evaluate_0.14 glue_1.4.2
graphics_4.0.4 grDevices_4.0.4 highr_0.8 htmltools_0.5.1.1
jsonlite_1.7.2 knitr_1.31 magrittr_2.0.1 markdown_1.1
methods_4.0.4 mime_0.10 rlang_0.4.10 rmarkdown_2.7.2
stats_4.0.4 stringi_1.5.3 stringr_1.4.0 tinytex_0.30.1
tools_4.0.4 utils_4.0.4 xfun_0.22 yaml_2.2.1

Pandoc version: 2.11.4

Hope you can help.
Thank you very much in advance.
Best,
Ana

Answer 1 · 2021-03-12T22:22:26.000Z

I responded to the issue on the {huskydown} issue you mentioned so hopefully we can track it down and solve it there!

Answer 2 · 2021-03-20T00:20:52.000Z

This issue has been automatically locked. If you believe you have found a related problem, please file a new issue (with a reprex: https://reprex.tidyverse.org whenever possible) and link to this issue. If a reprex is not applicable, recording a short Loom video showing what you are seeing can go a long way in helping to diagnose problems.