Pinned Repositories
Electrum
Visualization platform for exploring MIDAS protein-small molecule interaction data
analysis-template
Template for analysis projects
antismash
antiSMASH
bensard_figures_2019
Code required to replicate some figures from the manuscript
bioinformatics-bootcamp
Learning to code in isolation
cad
j-berg.github.io-archive
Github Pages template for academic personal website
UniqSeq
A primer design tool for identifying unique regions in genomes of a given species for PCR amplification of field samples.
Metaboverse
Visualization and analysis platform for metabolic data and network pattern recognition
XPRESSpipe
An alignment and analysis pipeline for Ribosome Profiling and RNA-seq data
j-berg's Repositories
j-berg/j-berg.github.io-archive
Github Pages template for academic personal website
j-berg/analysis-template
Template for analysis projects
j-berg/antismash
antiSMASH
j-berg/bioinformatics-bootcamp
Learning to code in isolation
j-berg/cad
j-berg/clock-app
Features data from several APIs which varies based on user location. Built with Javascript and SCSS.
j-berg/cluntun_analysis_2020
j-berg/CS6190-project
Project for CS 6190 course
j-berg/DecoID
Metabolomics software for database-assisted deconvolution of MS/MS spectra
j-berg/demultiplex_satay
j-berg/explore_colon
Explore gene expression data from colon cancer cohorts
j-berg/fastp_lite
j-berg/frodyma_2020
Data analysis for Frodyma paper
j-berg/handson-ml2
A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in Python using Scikit-Learn, Keras and TensorFlow 2.
j-berg/hughes_rnaseq_2019
Repository for RNA-seq analysis associated with Hughes, et. al., 2019
j-berg/j-berg
j-berg/j-berg.github.io
My personal website
j-berg/li_2021
j-berg/mechano_media_analysis
Density and media comparisons
j-berg/NCI_F99_application
My funded NCI F99 application
j-berg/nowinski_2020
Code for Nowinski, et. al. 2020
j-berg/nuebel_2020
Analysis code for Nuebel, et. al.
j-berg/ouyang_eLife2024
j-berg/presentations
Repo for presentations
j-berg/python-template
Template repo for python software
j-berg/ribopipe
Legacy archive, now renamed and found at https://github.com/XPRESSyourself/XPRESSpipe
j-berg/rutter.chpc.utah.edu
Templates for Rutter lab software page
j-berg/setup
Setup computer
j-berg/volcano-fx
j-berg/winter_analysis_2022