j3xugit

AttnPacker

Code and Pre-Trained Models for "AttnPacker: An end-to-end deep learning method for protein side-chain packing"

deep-review

A collaboratively written review paper on deep learning, genomics, and precision medicine

DeepLearning

Deep Learning (Python, C/C++, Java, Scala, Go)

glinter

Graph Learning of INTER-protein contacts

GREMLIN_CPP

GREMLIN - learn MRF/potts model from input multiple sequence alignment! Implementation now available in C++ and Tensorflow/Python!

Networks

pyconsFold

RaptorX-3DModeling

Note that current version does not include search of very large metagenome data. For some proteins, metagenome data is important. We will update this as soon as possible.

RaptorX-Contact

Deep residual neural network for protein contact/distance prediction developed by Xu group

RaptorX-Single

j3xugit/RaptorX-3DModeling

Note that current version does not include search of very large metagenome data. For some proteins, metagenome data is important. We will update this as soon as possible.

j3xugit/RaptorX-Contact

Deep residual neural network for protein contact/distance prediction developed by Xu group

j3xugit/DeepLearning

Deep Learning (Python, C/C++, Java, Scala, Go)

j3xugit/GREMLIN_CPP

GREMLIN - learn MRF/potts model from input multiple sequence alignment! Implementation now available in C++ and Tensorflow/Python!

j3xugit/AttnPacker

Code and Pre-Trained Models for "AttnPacker: An end-to-end deep learning method for protein side-chain packing"

j3xugit/deep-review

A collaboratively written review paper on deep learning, genomics, and precision medicine

j3xugit/glinter

Graph Learning of INTER-protein contacts

j3xugit/Networks

j3xugit/pyconsFold

j3xugit/RaptorX-Single

j3xugit/ResNetQA

ResNetQA: Improved protein model quality assessment by integrating sequential and pairwise features using deep learning