jaeddy/data-coordination-tools

Existing tools for data coordination being used at Sage

Data coordination tools

This repository gathers existing tools used for data coordination at Sage, per the metadata working group's 2019 objectives:

(A) Create a GitHub repository containing:

• List of existing tools for data coordination converted, when applicable, to work with a common set of underlying schema standards (i.e. Schema.org and JSONSchemas) and documentation of the above tools. Tools should include at minimum
  • tools for metadata schema definition
  • tools for converting metadata schemas into validation schemas
  • tools for validating metadata associated with new data uploaded to Synapse, based on metadata schema
  • tools for validating existing metadata on Synapse
• Gap analysis vis-a-vis existing data onboarding use-cases across Sage

(S) Document describing best practices across projects (aka how we will support data curation going forward)

Tools

• HTAN-data-pipeline
• HTAN_Shiny
• dccvalidator
• dccmonitor
• synapseAnnotations
• annotator
• Genie
• annotationUI
• ki Rally Manager
• syndccutils

Gap analysis

See columns E and F of the "Top ranked use cases" sheet here: https://docs.google.com/spreadsheets/d/1UgY3JR6WlHVgHkGTzs1wUpV5E7QFuOpwC3ph1e8-zl4/edit#gid=1371550427