jamesaoverton/curatron

Search and trees for various finders

Closed this issue · 3 comments

Curators should be able to use Excel. We can do various validation inside Excel, but we can't include large ontologies. So I think the curators will need web pages where they can quickly look up the terms they need. I think we have everything we need with Gizmos search and tree functionality. We will need pages for:

  1. organisms (down to species level)
  2. subspecies
  3. proteins
  4. non-peptides
  5. molecules
  6. assays (divide into bcell, tcell, mhc?)
  7. diseases
  8. geolocations

... I've probably misses some, but I think these are the most important ones, listed in order of importance.

This will come from the OWL files built by Arborist and intended for the curation system.

This will also support #8.

Should this be a CGI script for DROID, or a standalone Flask app?

I’d prefer Flask with the CGI option used here https://github.com/ontodev/sprocket/blob/main/sprocket/run.py#L691

Resolved by #12