slideflow/slideflow

Issues

• new feature extraction model

  #417 opened 3 months ago by zhangguy
  3

• Visualization of Label mask in slideflow-studio

  #418 opened 3 months ago by lafith
  0

• switching slide backend in python

  #416 opened 3 months ago by zhangguy
  2

• Extracting tiles from specific WSI locations

  #415 opened 3 months ago by pacocp
  1

• [BUG] Resnet50 model load error when used as a feature extractor in Slideflow3.0.0

  #412 opened 3 months ago by ShihuiZhu
  3

• SlideFlow Studio crushes when clicking on 'Slides' button in the Project section

  #413 opened 3 months ago by frasca17
  1

• slideflow 3.0 gives error when loading project

  #411 opened 4 months ago by Meijian
  4

• [BUG] ValueError: DataLoader does not contain any batches when using attention/transmil MIL method

  #358 opened 4 months ago by NaokiThread
  1

• SlideFlow-Studio shows wrong percentages of probability of the feature

  #405 opened 4 months ago by frasca17
  6

• [LICENSE] GPL is not compatible with restricting to non-commercial use

  #372 opened 4 months ago by johnurbanik
  5

• linear prediction

  #388 opened 4 months ago by mnezaf
  3

• How to decrease the max number of worker during training

  #396 opened 4 months ago by biocaitao
  2

• ctranspath for feature extraction still gives error in 2.3.2

  #406 opened 4 months ago by Meijian
  5

• unable to install slideflow 2.3.2

  #403 opened 4 months ago by Meijian
  1

• [BUG] Dictionary attribute error when using the new `sf.mil.get_mil_tile_predictions` function

  #348 opened 4 months ago by sz3029
  2

• Latest foundation models?

  #392 opened 5 months ago by Meijian
  4

• [BUG] Heatmap generation error

  #360 opened 4 months ago by jziggles
  4

• Cannot use predict slide for MIL model

  #365 opened 4 months ago by jziggles
  4

• Using ctranspath for extractor on build_feature_extractor gives error

  #381 opened 4 months ago by maxxfarma
  8

• MIL with Stain Augmentation

  #364 opened 8 months ago by sanosano
  2

• [BUG] Package Conflicts with Pyomo/Bonmin in with environments created with environment.yml

  #382 opened 6 months ago by emmachancellor
  1

• How do I run Slideflow studio from the docker container

  #352 opened 9 months ago by Phues
  2

• multimodal inputs of clinical information in multiple instance learning

  #359 opened 8 months ago by NaokiThread
  2

• Project doesn't see slides. Help needed.

  #363 opened 8 months ago by LeventAksakal
  2

• [QUESTION] Is Ninja required to run this?

  #384 opened 4 months ago by lcniel
  1

• [QUESTION] Is the Pandas < 2 restriction necessary?

  #385 opened 4 months ago by lcniel
  1

• [BUG] Multiprocessing error when using multi-GPU feature extraction

  #355 opened 5 months ago by NaokiThread
  2

• [BUG] File path cannot be properly resolved on Windows

  #334 opened a year ago by Mr-Milk
  1

• Loading pre-extracted feature bags for slide prediction using MIL model in slideflow studio

  #349 opened a year ago by sz3029
  1

• [BUG] Issue with multi-threading when using blur filtering

  #375 opened 7 months ago by tnnandi
  1

• [BUG] Following slideflow documentation for running the containers leads to error.

  #387 opened 5 months ago by Nicolai-98
  1

• [BUG] cannot download preconfigured dataset

  #370 opened 5 months ago by WNZhao1988
  2

• Unable to use sf.DatasetFeatures with zip files

  #380 opened 5 months ago by maxxfarma
  1

• Is slideflow studio supported on Windows?

  #361 opened 8 months ago by LeventAksakal
  2

• [BUG] Project-wise cell segmentation does not run

  #356 opened 8 months ago by Sbrussee
  1

• Multiple GPU Acceleration

  #354 opened 8 months ago by NaokiThread
  4

• Balancing Unbalanced Categorical Datasets with Image Augmentation

  #320 opened 8 months ago by millea46
  6

• [BUG] Unable to generate heatmaps when stride_div > 1 for MIL models

  #331 opened a year ago by sz3029
  2

• [BUG FIX] Zeiss .czi files not loading, pyvips error

  #347 opened a year ago by skochanny
  1

• [BUG] TypeError: object.__init__() takes exactly one argument

  #346 opened a year ago by jamesdolezal
  0

• Bootstrap

  #333 opened a year ago by mnezaf
  1

• [HistoSSL/heatmaps] MIL model attention heatmaps display bright lines when use histoSSL as the feature extractor

  #336 opened a year ago by sz3029
  4

• [BUG] PIL.UnidentifiedImageError: cannot identify image file

  #325 opened a year ago by sz3029
  4

• [BUG] Datasets do not pass `min_tiles` filter when training GANs

  #315 opened a year ago by siddhir
  3

• An approach to consider multiple slides per patient with weak labels.

  #316 opened a year ago by lysukhin
  7

• [BUG] .mrxs slides missing MPP (openslide.mpp-x) error

  #323 opened a year ago by Meijian
  4

• [help wanted] Unable to load dataset in a new project

  #324 opened a year ago by sz3029
  4

• [BUG] Providing extractor argument to sf.mil.eval.predict_slide throws error

  #310 opened a year ago by bplee
  1

• [BUG] Unable to tile WSIs

  #318 opened a year ago by ajr82
  2

• Environment file environment.yml update for slideflow version 2

  #321 opened a year ago by sz3029
  3