jbisanz/qiime2R

Failed to install qiime2R in R (4.0.1)

Closed this issue · 3 comments

Lin936 commented

Hello,
I am new to R and trying to install qiime2R, but seems qiime2R couldn't be installed in version 4.0.1
In this case, how to install qiime2R?

Thanks for your help
Lin

jbisanz commented

Hi Lin,

qiime2R will work in 4.0.1. Please provide details on how you tried to install it and any error messages you received.

Jordan

Lin936 commented

Hi Jordan,
Thanks for your quick response.
I just tried again, but still failed.

devtools::install_github("jbisanz/qiime2R")
Downloading GitHub repo jbisanz/qiime2R@HEAD
These packages have more recent versions available.
It is recommended to update all of them.
Which would you like to update?

1: All
2: CRAN packages only
3: None
4: DT (0.14 -> 0.15) [CRAN]

Enter one or more numbers, or an empty line to skip updates:2
DT (0.14 -> 0.15) [CRAN]
Installing 1 packages: DT

There is a binary version available but the source version is later:
binary source needs_compilation
DT 0.14 0.15 FALSE

installing the source package ‘DT’

trying URL 'https://cran.rstudio.com/src/contrib/DT_0.15.tar.gz'
Content type 'application/x-gzip' length 1508722 bytes (1.4 MB)
downloaded 1.4 MB

ERROR: failed to lock directory 'C:/Program Files/R/R-4.0.1/library' for modifying
Try removing 'C:/Program Files/R/R-4.0.1/library/00LOCK-DT'
Error: Failed to install 'qiime2R' from GitHub:
(converted from warning) installation of package ‘DT’ had non-zero exit status

I have no idea what should I do.
Lin

Lin936 commented

Hi Jordan,
I deleted DT and installed it again, now it seems ok!
Thanks Jordan.
Lin

  • 👍1