jbisanz/qiime2R

Feature request: support for importing q2-longitudinal artifacts

Opened this issue · 3 comments

yanxianl commented

Hi,

Thanks for developing and maintaining the qiim2R package that makes life a lot easier when exporting qiime2 artifacts to R. I tried to import first-differences/distances artifacts from the q2-longitudinal plugin, but I couldn't find the data after importing qiime2 artifacts with qiime2R. I guess this is not supported yet?

jbisanz commented

Perhaps it is an artifact format that isn't supported yet. What are you specifically trying to import?

yanxianl commented

first-differences.qza (output from qiime longitudinal first-differences)
first-distances.qza (output from qiime longitudinal first-distances).
Link to artifacts from qiime2 tutorial: https://docs.qiime2.org/2022.2/tutorials/longitudinal/#first-differencing-to-track-rate-of-change

jbisanz commented

That should be a straight forward addition, i'll add them in the next couple days.

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