jbisanz/qiime2R

Exporting R objects to qza files

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Hello,

Thanks so much for making this package. For my workflow, I am analyzing abundance data in R and then exporting it to Qiime 2 for other analyses (e.g., Songbird). This currently requires me to first export as a biom table in R and then, using a separate conda environment, convert that biom table to a qza object using Qiime 2. It would be much faster, though, to simply go from a table in R to exporting a qza file. Is this possible to do with qiime2R? (I looked in the documentation but couldn't find this; moreover, the closest function write_q2manifest() is not applicable)

Thanks!