jbisanz/qiime2R

summarize_taxa

Closed this issue · 1 comments

andrneves commented

Hello,

I used summarize_taxa to give me the sum of the counts, but the function returned the wrong sum by placing the results in column P168.
The data is attached.

Would you happen to have any suggestions to fix this issue?

The code used is:

taxonomy <- read_qza ("taxonomy.qza")$data %>% parse_taxonomy()
SVs<-read_qza("table.qza")$data
abundance <- summarize_taxa(SVs, taxonomy)$Genus
view(abundance)

Thanks.

SVs.csv
taxonomy.csv