OTU with sequence instead of unique identifier as row names?
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hank00000 commented
I'm trying to create a phyloseq object from a qza OTU table. I have my taxa table and metadata, but the tax_table has the sequences only, and my OTU table pulled from read_qza has the identifiers only.
Essentially I'm trying to match CCTATATGCG to b99fkbbnoa9039iw. Is there a better way than otus <- qzafile$data to pull an OTU table, where I can specify that I want the sequence as the row name, not the random identifier?
thank you!!
hank00000 commented
I ended up just manually renaming them by copying the rownames(taxid) to rownames(otus).