`--seq-matches` should distinguish deltas somehow
jeffkaufman opened this issue · 1 comments
jeffkaufman commented
$ seqdsp tests/a.fasta --seq-matches TGGGAGTTT
TCAGTTTCAGATT[TGGGTGTTT]TATGATTTATACTATACGTGACAAGAAAGTTGTC
Note that it has matched TGGGTGTTT
with TGGGAGTTT
(a single substitution), but you can't tell the match quality visually.
For substitutions we could either underline or not color the matching section
Insertions are already displayed fine, by not coloring.
Deletions are hard to display, since there's nothing to be shown. Maybe put a -
in the sequence?
jeffkaufman commented
done in d143bc9