Comparisons for multiple groups

[tywang-tw]

Hi Jeff,

I'd like to run the expression analysis for multiple comparisons such as the list below.

pairs <- list(
c("exp1", "ctrl"),
c("exp2", "ctrl"),
c("exp3", "ctrl"),
c("exp4", "ctrl"),
...)

Can you include some augments for this request? Thanks.

[jeffsocal]

Thank you for the suggestion. I created an option to allow for "pairs" exactly as you had pointed out for both expression() and enrichment(). This will first validate your pairs against the data to ensure those sample names exist, then it will iterate through each pair, saving the data back into the original data object. This is available in the v1.6.1 release.

data |> expression(.pairs = pairs) |> enrichment(pairs = pairs, .term = 'biological_process)