jeffsocal/tidyproteomics

num_peptides, num_unique peptides does not import properly MaxQuant

TARobison opened this issue · 2 comments

When importing proteinGroups.txt, I get NA values for all num_peptides, num_unique_peptides. This is not the case for num_psms, however. I have tried modifying the MaxQuant_proteins.tsv with no effect. Any advice would be appreciated

Would you be willing to send along the file or a sample file I can examine? You can email me at the publication's corresponding author.

Thanks for pointing this out, I need to update the import definition to allow for the counts to register - this is a bug. I will push an update shortly.