jgilis

jgilis's Stars

• lowlighter/metrics

  📊 An infographics generator with 30+ plugins and 300+ options to display stats about your GitHub account and render them as SVG, Markdown, PDF or JSON!

  Language:JavaScript13.9k1023041.7k

• jump-dev/JuMP.jl

  Modeling language for Mathematical Optimization (linear, mixed-integer, conic, semidefinite, nonlinear)

  Language:Julia2.2k861.5k397

• Kunena/Kunena-Forum

  Kunena Forum - Forum / Bulletin Board / Discussions component for Joomla - This is the 6.x/5.x main development branch. Please do not open issues regarding earlier versions of Kunena

  Language:PHP1.7k643.5k811

• r-lib/pkgdown

  Generate static html documentation for an R package

  Language:R722171.7k336

• JuliaAcademy/DataScience

  Data Science in Julia course for JuliaAcademy.com, taught by Huda Nassar

  Language:Jupyter Notebook5023447260

• jtleek/genomicspapers

  The Leek group guide to genomics papers

  472691173

• openproblems-bio/openproblems

  Formalizing and benchmarking open problems in single-cell genomics

  Language:Shell321718581

• cokelaer/bioservices

  Access to Biological Web Services from Python.

  Language:Python2841720761

• wwood/kingfisher-download

  Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.

  Language:Python24873438

• GoekeLab/bambu

  Reference-guided transcript discovery and quantification for long read RNA-Seq data

  Language:R190719624

• theislab/zellkonverter

  Conversion between scRNA-seq objects

  Language:R152510028

• Bioconductor/Contributions

  Contribute Packages to Bioconductor

  135273.7k33

• saeyslab/multinichenetr

  MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell transcriptomics data

  Language:HTML12539914

• timoast/sinto

  Tools for single-cell data processing

  Language:Python11826325

• kvittingseerup/IsoformSwitchAnalyzeR

  An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)

  Language:R103423718

• stemangiola/CuratedAtlasQueryR

  Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.

  Language:R895757

• Bioconductor/BiocParallel

  Bioconductor facilities for parallel evaluation

  Language:R671916729

• LCSB-BioCore/COBREXA.jl

  Constraint-Based Reconstruction and EXascale Analysis

  Language:Julia4371789

• thelovelab/fishpond

  Differential expression and allelic analysis, nonparametric statistics

  Language:R273179

• XueyiDong/LongReadBenchmark

  Benchmarking long-read RNA-seq analysis tools

  Language:R25242

• statOmics/satuRn

  satuRn is a highly performant and scalable method for performing differential transcript usage analyses.

  Language:R203161

• tpq/peakRAM

  [EXPERIMENTAL] An R package to monitor the peak RAM used by R expressions and functions

  Language:R20441

• MetabolicAtlas/standard-GEM

  The standard for open-source GEMs on GitHub

  1911225

• Beramos/DS-Julia2925

  Julia2925: learn a fast and intuitive programming language in two workdays.

  Language:HTML153818

• iSEE/iSEEu

  The iSEE Universe

  Language:R96217

• Bioconductor/pkgrevdocs

  Training Material for Community Reviewers

  Language:TeX8124518

• grimbough/code.bioconductor.org

  Tools for browsing the Bioconductor code repository

  Language:CSS4080

• ExaScience/Severo.jl

  a software package for analysis and exploration of single-cell RNA-seq datasets

  Language:Julia3702

• csoneson/ConfoundingExplorer

  Language:R220

• diegomscoelho/AD-IsoformSwitch

  Language:R2300