problems building several bioconda recipes (ete3 optional dependencies)
Opened this issue · 8 comments
@bgruening, @nsoranzo , any idea why this is still failing on Travis?: https://travis-ci.org/jhcepas/bioconda-recipes/builds/189407297
Everything compiles fine locally on my macbook (also with --docker).
- The linux build runs ok on Travis, except for a weird "bad interpreter" error when compiling phyml.
- The OSX build fails completely, but don't know why. The same recipes seem to compile well when tested individually (https://travis-ci.org/jhcepas/bioconda-recipes/builds/189406502)
Drafts recipes under testing: bioconda/bioconda-recipes@master...jhcepas:phylotools
@jhcepas can you add this to your build.sh please: https://github.com/bioconda/bioconda-recipes/blob/27ebbe045174267682315e008b6e682f416b7ca8/recipes/snp-sites/build.sh#L2-L12
Yes, automake has been fixed in conda-forge, but you may need to require >=1.15 in meta.yaml . autoconf is not fixed yet.
thanks! that solved the problem with phyml on linux.
The OSX builds still fail, but work locally. Any clue?
Do you have a link? I doubt I can help fixing OSX errors, but I can look at it.
You can also skip a build, then no OSX package will be build.
Here is the travis log. https://travis-ci.org/jhcepas/bioconda-recipes/jobs/189480870
Cannot see much there... (except for the "find" error)
Check, for instance, paml compilation. It fails in the previous OSX build linked, but worked if the same recipe is pushed independently in a different branch: https://travis-ci.org/jhcepas/bioconda-recipes/jobs/189406504
Mh, https://travis-ci.org/jhcepas/bioconda-recipes/jobs/189480870#L349
A file could not be found ...
@jhcepas if you have submit this separate branch as PR and we will see what happens. Thanks for working so long on your branch, now it's time to go public :)