jhsiao999

jhsiao999's Stars

• IndrajeetPatil/ggstatsplot

  Enhancing {ggplot2} plots with statistical analysis 📊📣

  Language:R2k43589184

• kassambara/ggpubr

  'ggplot2' Based Publication Ready Plots

  Language:R1.1k33583164

• workflowr/workflowr

  Organize your project into a research website

  Language:R82130252106

• broadinstitute/CellBender

  CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.

  Language:Python2851031352

• liulab-dfci/TRUST4

  TCR and BCR assembly from RNA-seq data

  Language:C272728147

• dtm2451/dittoSeq

  Color blindness friendly visualization of single-cell and bulk RNA-sequencing data

  Language:R18657718

• SingleR-inc/SingleR

  Clone of the Bioconductor repository for the SingleR package.

  Language:R1721221019

• hhcho/densvis

  Density-preserving data visualization tools den-SNE and densMAP

  Language:Python10981213

• const-ae/glmGamPoi

  Fit Gamma-Poisson Generalized Linear Models Reliably

  Language:R10365814

• ryantibs/best-subset

  Comparisons between best subset selection and other popular sparse regression estimators

  Language:R86151734

• stephens999/ashr

  An R package for adaptive shrinkage

  Language:R79109636

• waldronlab/data-science-seminar

  Topics In Data Science and Bioinformatics

  Language:HTML78461034

• stephenslab/fastTopics

  Fast algorithms for fitting topic models and non-negative matrix factorizations to count data.

  Language:R757487

• niaid/dsb

  Normalize CITEseq Data

  Language:R63104313

• willtownes/scrna2019

  supporting code for the multinomial single cell RNA-Seq paper

  Language:R515412

• ManuSetty/wishbone

  Wishbone is an algorithm to align cells along developmental trajectories with branches

  Language:Jupyter Notebook4194636

• gmum/gmum.r

  GMUM machine learning group R package

  Language:C++331044810

• yuchaojiang/SCALE

  Allele-Specific Expression by Single-Cell RNA Sequencing

  Language:R283129

• kkdey/Logolas

  R package for Enrichment Depletion Logos (EDLogos) and String Logos

  Language:R274231

• kkdey/CorShrink

  R package for adaptive correlation and covariance matrix shrinkage.

  Language:R23323

• aselewa/dropseqRunner

  Lightweight pipeline for processing droplet-based single-cell RNA-seq data

  Language:Python17356

• KechrisLab/ASAShortCourse-MultiOmics

  Short Course on Multi-Omics

  Language:HTML132011

• stephenslab/dsc

  Repo for Dynamic Statistical Comparisons project

  Language:HTML12821412

• normjam/normjam.github.io

  Normjam: a workshop on the normalization of scRNA-seq data

  Language:HTML8502

• RGLab/BNCResponse

  response to the BNC paper

  Language:HTML880

• jdblischak/fucci-seq

  Characterizing and inferring quantitative cell cycle phase in single-cell RNA-seq data analysis

  Language:R7454

• yelabucsf/lupus_1M_cells_clean

  Language:Jupyter Notebook6801

• tlverse/enar2023-workshop

  Materials for the workshop "Targeted Learning: Advanced Methods for Causal Machine Learning" at the 2023 International Biometric Society's Eastern North American Region (ENAR) Conference

  Language:R4404

• jhsiao999/Humanzee

  Tools for statistical analysis of genomics data

  Language:R3211

• ChenMengjie/Citrus

  Language:C++2311