jianlin-cheng

CATA

Collaborative Attentive-Autoencoder for scientific article recommendation

Cryo2Struct

Deep learning tools for converting cryo-EM density maps to protein structures

CryoSegNet

Customized foundational image segmentation models for picking protein particles in cryo-EM images

CryoTransformer

A transformer model for picking protein particles in cryo-EM images

DeepComplex

Deep learning prediction of inter-chain contacts of protein complex

DeepGRN

Deep learning for modeling gene regulatory network

DProQA

DRLComplex

Deep reinforcement learning for protein complex modeling

GenomeFlow

GenomeFlow: A Graphical Tool for Modeling and Analyzing 3D Genome Structure

TransFun

Transformer for protein function prediction

jianlin-cheng/CryoTransformer

A transformer model for picking protein particles in cryo-EM images

jianlin-cheng/TransFun

Transformer for protein function prediction

jianlin-cheng/DeepGRN

Deep learning for modeling gene regulatory network

jianlin-cheng/CryoSegNet

Customized foundational image segmentation models for picking protein particles in cryo-EM images

jianlin-cheng/CATA

Collaborative Attentive-Autoencoder for scientific article recommendation

jianlin-cheng/DRLComplex

Deep reinforcement learning for protein complex modeling

jianlin-cheng/Cryo2Struct

Deep learning tools for converting cryo-EM density maps to protein structures

jianlin-cheng/DeepComplex

Deep learning prediction of inter-chain contacts of protein complex

jianlin-cheng/DProQA

jianlin-cheng/GNET2

Gene regulatory network modeling tool (GNET2)

jianlin-cheng/PreMut

Accurate prediction of single-site mutation induced changes on protein structures with equivariant graph neural networks

jianlin-cheng/DeepProLigand

A deep learning bioinformatics pipeline for protein-ligand complex structure prediction

jianlin-cheng/DRCon

Deep dilated convolutional residual neural network for predicting interchain contacts of protein homodimers

jianlin-cheng/DeepComplex2

Deep learning prediction of protein complex structures from sequences

jianlin-cheng/DISTEMA

Prediction of the quality of single protein model using deep learning and residue-residue distance maps

jianlin-cheng/InterpretContactMap

Deep learning methods for interpreting protein contact maps

jianlin-cheng/MULTICOM_Human_CASP14

MULTICOM human system for CASP14 tertiary structure prediction

jianlin-cheng/DeepCryoEM

Deep learning methods for CryoEM data analysis

jianlin-cheng/DistDom

Deep learning prediction of protein domains from distance maps

jianlin-cheng/DNCON2_Inter

Predicting inter-protein contacts using DNCON2

jianlin-cheng/SAXSDom

This is a bioinformatics tool to use SAXS data to assemble protein domain structures into full-length structural models

jianlin-cheng/BML_FAQ

This repository contains the frequently asked questions, their answers and the description of resources in the Bioinformatics and Machine Learning Lab (BML).

jianlin-cheng/cryoten

CryoTEN: Efficiently Enhancing Cryo-EM Density Maps Using Transformers

jianlin-cheng/DFOLD

The distance-based protein folding

jianlin-cheng/SERSFormer2

Deep learning methods for multi-pesticide detection from SERS data

jianlin-cheng/DRCon_Hetero

Deep learning method for predicting interchain contacts in heterodimers

jianlin-cheng/CryoDDM

A dataset for training and testing machine learning methods for denoising cryo-EM density maps

jianlin-cheng/DeepRank3

Deep learning prediction of the quality of protein structural models with inter-residue distance maps

jianlin-cheng/GFOLD

Distance-based protein folding based on gradient descent optimization

jianlin-cheng/ProBST

Protein binding site prediction with transformers