Pinned Repositories
academic-kickstart
Easily create a beautiful website using Academic and Hugo
airflow-repo-template
The easiest way to run Airflow locally, with linting & tests for valid DAGs and Plugins.
FeatureBin
A tool for working with gene feature files, and SAM files.
immuno-mark
A small application to facilitate markup of multi-channel images
NextGenScripts
A collection of code used in analyzing and organizing high throughput DNA sequencing data.
parabio
Parallelization code for common easily parallelized bioinformatics tools
silp2
Scaffolding using Integer Linear Programming
SINAH
whole genome scaffolding
jim-bo's Repositories
jim-bo/silp2
Scaffolding using Integer Linear Programming
jim-bo/immuno-mark
A small application to facilitate markup of multi-channel images
jim-bo/parabio
Parallelization code for common easily parallelized bioinformatics tools
jim-bo/academic-kickstart
Easily create a beautiful website using Academic and Hugo
jim-bo/airflow-repo-template
The easiest way to run Airflow locally, with linting & tests for valid DAGs and Plugins.
jim-bo/cancer-privacy-statements
A repository of my survey of privacy statements from various entities measure biomarkers for cancer patients.
jim-bo/cbionotebooks
Cancer biology ipython notebooks
jim-bo/compose-services
Deploy Gen3 using Docker compose
jim-bo/dimwit
dimension reduction survey
jim-bo/docker-build-nodejs
jim-bo/hotspot_logreg
Logistic regression for hotspot detection
jim-bo/jim-bo.github.io
blog about my interests
jim-bo/jupyter-mantis
jim-bo/learngitlfs
temporary repository to learn gitlfs
jim-bo/material2-app
Simple app that consumes Angular Material 2 components
jim-bo/miRId
miRNA identification pipeline
jim-bo/notebooks
Bioinformatics notebooks
jim-bo/oncotreenx
light networkx wrapper around the oncotree data structure
jim-bo/pythologist
Read files from inForm software by PerkinElmer
jim-bo/python_tutorial
Intro to Python tutorial for Department of Data Science at DFCI
jim-bo/quarto-web
Quarto website
jim-bo/rq
Simple job queues for Python
jim-bo/scafathon
Genome scaffolding comparison framework
jim-bo/scdecon
single-cell assisted gene expression deconvolution
jim-bo/scikit-image
Image processing in Python
jim-bo/spatial-review
repository of my random walk through spatial genomics and proteomics methods.
jim-bo/textClassifier
Text classifier for Hierarchical Attention Networks for Document Classification
jim-bo/tiff-deid
Remove specificed text from TIFF metadata using command line tools
jim-bo/trialpredict
jim-bo/type_template
Starting typescript with semantic-ui