/SRUSSoftware

Free software for research of super-resolution imaging.

SRUS Software Version 2.3

If you watch this repository, you can be notified of updates.

"ULIS_SRUS2.3_non_parallel_version" is the same as "ULIS_SRUS2.3" except that parallel calculations are not used in motion correction.

If you find long and straight lines after tracking, please check if the "max blood flow speed (unit: m/s)" is set too large and try smaller value to it.

Interface

Load Data / Quick Run / Motion Correction

Interface1

Localisation / Tracking / Plotting

Interface2

The above image is reconstructed from mouse brain data in the Ultra-SR Challenge 2022, provided by Olivier Couture.

The frame rate of the data is 1/10 of the NBME public mouse brain data.

software_interface_heart

Ihe above image is reconstructed from transthoracic CEUS data (duration 3.6s) of a patient.

Parameter Calculation / Animation Generation

Interface3

Interface3

License

Before downloading and using the software, you accept all the terms contained in the End User License Agreement.

Contact Information

Author: Jipeng Yan, Meng-Xing Tang.

Ultrasound Lab for Sensing and Imaging, Department of Bioengineering, Imperial College London.

Feedbacks, questions, and requirements about Software: Jipeng Yan (j.yan19@imperial.ac.uk, jipeng_yan@163.com)

Rights, collaborations, and others to Meng-Xing Tang (mengxing.tang@imperial.ac.uk)

How to use

Graphical guides can be found in User Guide.

Brief description of software can be found in Software Description.

Sample Data

Ex vivo pig heart: https://doi.org/10.6084/m9.figshare.22331635

In vivo human heart: https://doi.org/10.5281/zenodo.11096558

Academic reference to be cited:

  1. Jipeng Yan, Tao Zhang, Jacob Broughton-Venner, Pintong Huang, Meng-Xing Tang. Super-Resolution Ultrasound Through Sparsity-Based Deconvolution and Multi-Feature Tracking, IEEE Transactions on Medical Imaging, 2022. DOI: 10.1109/TMI.2022.3152396

  2. Jipeng Yan, Biao Huang, Johanna Tonko, Matthieu Toulemonde, Joseph Hansen-Shearer, Qingyuan Tan, Kai Riemer, Konstantinos Ntagiantas, Rasheda A Chowdhury, Pier D Lambiase, Roxy Senior, Meng-Xing Tang. Transthoracic Ultrasound Localization Microscopy of Myocardial Vasculature in Patients, Nature Biomedical Engineering, 2024. DOI: 10.1038/s41551-024-01206-6

Acknowledgement

Thanks for insightful suggestions/feedbacks from Prof. Yuanyi Zheng, Prof. Pintong Huang, Prof. Christopher W Dunsby, Dr. Tao Zhang, Mr. Joseph Hansen-Shearer Dr. Matthieu Toulemonde, Dr. Channa Jayasena, Mrs. Nikoleta Papanikolaou, Mr. Biao Huang and Dr. Su Yan.

Updates from Version 2.2 to 2.3

GUI 2.2->2.3

More details about updates can be found at the end of the User Guide.