Pinned Repositories
affinder
Quickly find the affine matrix mapping one image to another using manual correspondence points annotation
h5cat
Quick preview of HDF5 files on the command line
jax-workshop
llc-tools
Decorators to make it easier to write SciPy LowLevelCallables
napariboard-proto
Prototype implementation of napari-integrated CNN training viewer
ray
Automatic segmentation of electron microscopy volumes
scipy-japan-2019
NumPy tutorial given at SciPy Japan 2019
skan
Python module to analyse skeleton (thin object) images
streaming-talk
Resources for a talk about streaming data analysis in Python
zarpaint
Paint segmentations directly to on-disk/remote zarr arrays
jni's Repositories
jni/napariboard-proto
Prototype implementation of napari-integrated CNN training viewer
jni/halfway-to-i2k-skimage-napari
Repo for halfway to i2k workshop: Fundamentals of image analysis in Python with scikit-image, napari, and friends
jni/explode-view
Show exploded view of an image.
jni/scikit-image
Image Processing SciKit (Toolbox for SciPy)
jni/fastplotlib
A fast plotting library
jni/fpl-napari
prototype of napari with fastplolib as the graphics backend
jni/1password-teams-open-source
Get a free 1Password Teams membership for your open source project
jni/cookiecutter-napari-plugin
Cookiecutter for napari plugins
jni/defdap
A python library for correlating EBSD and HRDIC data
jni/ilovesymposia.com
Source for ilovesymposia.com
jni/matplotlib
matplotlib: plotting with Python
jni/microscopium
Unsupervised clustering of high content screen samples
jni/napari-animation
A napari plugin for making animations
jni/napari-animation-feedstock
A conda-smithy repository for napari-animation.
jni/napari-console
A plugin that adds a console to napari
jni/napari-demos
Scripts to demonstrate napari with real data
jni/napari-LatAm-workshop-2023
Napari training material for a workshop by the CZI funded initiatives LIBRE hub, LatAm Bioimaging, Napari
jni/napari-sphinx-theme
jni/napari-talk-scipy-2023
notebook and (eventually) slides from scipy 2023 talk
jni/napari-tiff
A napari reader plugin for tiff images.
jni/napari-vesuvius
napari plugin to work with Vesuvius Challenge data
jni/npe2-feedstock
A conda-smithy repository for npe2.
jni/opencollective-frontend
Open Collective's Frontend. A React app powered by Next.js.
jni/platelet-analysis-1
A python package for analysing platelet movement
jni/pooch
A friend to fetch your data files
jni/python-elgato-streamdeck
Python library to control the Elgato Stream Deck.
jni/scikit-image-feedstock
A conda-smithy repository for scikit-image.
jni/scipy-2023-tutorial
jni/skan-feedstock
A conda-smithy repository for skan.
jni/xarray
N-D labeled arrays and datasets in Python