jonathanfischer97
PhD student. Computational biophysics, simulation, biochemical oscillators, Julia
Margaret Johnson Lab, Johns Hopkins UniversityBaltimore, MD
Pinned Repositories
AI_CodingFun
AnalysisOfViableParameterRegions
BNGL
Catalyst.jl
Chemical reaction network and systems biology interface for scientific machine learning (SciML). High performance, GPU-parallelized, and O(1) solvers in open source software.
DynamicalSystems.jl
Award winning software library for nonlinear dynamics and nonlinear timeseries analysis
Evolutionary.jl
Evolutionary & genetic algorithms for Julia
InteractiveOscillator
Interactive sensitivity analysis of my biochemical oscillator model. Uses GLMakie to allow fast and reactive resolving and plotting of the ODE solutions.
jonathanfischer97
My bio README
jonathanfischer97.github.io
My website
Optimization.jl
Mathematical Optimization in Julia. Local, global, gradient-based and derivative-free. Linear, Quadratic, Convex, Mixed-Integer, and Nonlinear Optimization in one simple, fast, and differentiable interface.
jonathanfischer97's Repositories
jonathanfischer97/InteractiveOscillator
Interactive sensitivity analysis of my biochemical oscillator model. Uses GLMakie to allow fast and reactive resolving and plotting of the ODE solutions.
jonathanfischer97/AI_CodingFun
jonathanfischer97/AnalysisOfViableParameterRegions
jonathanfischer97/BNGL
jonathanfischer97/Catalyst.jl
Chemical reaction network and systems biology interface for scientific machine learning (SciML). High performance, GPU-parallelized, and O(1) solvers in open source software.
jonathanfischer97/DynamicalSystems.jl
Award winning software library for nonlinear dynamics and nonlinear timeseries analysis
jonathanfischer97/Evolutionary.jl
Evolutionary & genetic algorithms for Julia
jonathanfischer97/jonathanfischer97
My bio README
jonathanfischer97/jonathanfischer97.github.io
My website
jonathanfischer97/M1-NERDSS
From Jonathan's M1 Mac
jonathanfischer97/Metaheuristics.jl
High-performance metaheuristics for optimization coded purely in Julia.
jonathanfischer97/Modeling-the-Living-Cell
jonathanfischer97/multi_assembly
jonathanfischer97/NERDSS
NonEquilibrium Reaction-Diffusion Self-assembly Simulator
jonathanfischer97/Optimization.jl
Mathematical Optimization in Julia. Local, global, gradient-based and derivative-free. Linear, Quadratic, Convex, Mixed-Integer, and Nonlinear Optimization in one simple, fast, and differentiable interface.
jonathanfischer97/Oscillator
For all my oscillation stuff
jonathanfischer97/OscTools
Tools for analyzing solutions to a model of a membrane-localization driven biological oscillator.
jonathanfischer97/SciMLBase.jl
The Base interface of the SciML ecosystem