jonn-smith

Pinned Repositories

Adv360-Pro-ZMK
Production repository for the all-new Advantage360 Professional using ZMK engine
Language:Makefile0 0 00
avatarify
Avatars for Zoom and Skype
Language:Python0 0 00
ClaraGenomicsAnalysis
SDK for GPU accelerated genome assembly and analysis
Language:C++0 0 00
color_trace
Traces multiple color images using potrace. This is similar to Inkscape's Trace Bitmap function.
Language:Python0 0 00
Complete-Striped-Smith-Waterman-Library
Language:C0 0 00
dotfiles
My collection of dotfiles and settings to make CLI life easier.
Language:Shell0 1 00
fasthammer
A fast pairwise hamming distance calculator
Language:C++0 1 00
flair
Full-Length Alternative Isoform analysis of RNA
Language:Python0 0 00
lalboard
A 3D-printed keyboard inspired by the DataHand
Language:Python0 0 00
python_cli_template
A template repository for python programs that use a CLI.
Language:Shell2 1 10

jonn-smith's Repositories

jonn-smith/python_cli_template
A template repository for python programs that use a CLI.
Language:Shell2 1 10
jonn-smith/Adv360-Pro-ZMK
Production repository for the all-new Advantage360 Professional using ZMK engine
Language:Makefile0 0 00
jonn-smith/avatarify
Avatars for Zoom and Skype
Language:Python0 0 00
jonn-smith/ClaraGenomicsAnalysis
SDK for GPU accelerated genome assembly and analysis
Language:C++0 0 00
jonn-smith/color_trace
Traces multiple color images using potrace. This is similar to Inkscape's Trace Bitmap function.
Language:Python0 0 00
jonn-smith/Complete-Striped-Smith-Waterman-Library
Language:C0 0 00
jonn-smith/dotfiles
My collection of dotfiles and settings to make CLI life easier.
Language:Shell0 1 00
jonn-smith/fasthammer
A fast pairwise hamming distance calculator
Language:C++0 1 00
jonn-smith/flair
Full-Length Alternative Isoform analysis of RNA
Language:Python0 0 00
jonn-smith/lalboard
A 3D-printed keyboard inspired by the DataHand
Language:Python0 0 00
jonn-smith/MosaicAligner
Gil's HMM-based alignment/recombination software from Zilversmit et al. 2013.
Language:C0 0 00
jonn-smith/ngraph.fromdot
Load dot files into ngraph.graph
Language:JavaScript0 0 00
jonn-smith/owner
Get rid of the boilerplate code in properties based configuration.
Language:Java0 0
jonn-smith/pomegranate
Fast, flexible and easy to use probabilistic modelling in Python.
Language:Jupyter Notebook0 0
jonn-smith/pysam
Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.
Language:C0 0
jonn-smith/seq-align
Fast, portable C implementations of Needleman-Wunsch and Smith-Waterman sequence alignment
Language:C0 0
jonn-smith/TALON
Technology agnostic long read analysis pipeline for transcriptomes
Language:Python0 0
jonn-smith/UMI-tools
Tools for handling Unique Molecular Identifiers in NGS data sets
Language:Python0 0
jonn-smith/VivaGraphJS
Graph drawing library for JavaScript
Language:JavaScript
jonn-smith/VVVVVV
The source code to VVVVVV!
Language:ActionScript0 0
jonn-smith/wdl
Workflow Description Language - Specification and Implementations
Language:Java0 0