jun305

jun305's Stars

• metagenlab/locus2genoplotr

  Plot bacterial gene maps and genome comparison plots from command line with genoPlotR and GenomeDiagram

  Language:Python101

• moshi4/pyGenomeViz

  A genome visualization python package for comparative genomics

  Language:Python27422

• thackl/gggenomes

  A grammar of graphics for comparative genomics

  Language:R59364

• wilkox/gggenes

  ➡️️➡️️⬅️️➡️️ Draw gene arrow maps in ggplot2

  Language:R49549

• medema-group/BiG-SCAPE

  Similarity networks of biosynthetic gene clusters

  Language:JavaScript6926

• nuzla/Pangenome-Graphs-Workshop

  This repository contains material to construct pangenome graphs for a small bacteria dataset detailing every step in the Nesi environment.

  Language:HTML2

• alipirani88/snpkit

  Modular workflow for Microbial Variant Calling and SNP diagnostics.

  Language:Python54

• lmc297/SNPBac

  SNP and variant calling pipeline for bacteria

  76

• darcyabjones/GenoClustR

  An R package for finding genomic clusters of co-regulated genes

  Language:R11

• AOHD/EPS_PIPELINE

  Pipeline for predicting exopolysaccharide gene clusters

  Language:R1

• DHAMMAPALB/cluster2hub

  cluster2hub identifies hubs in the gene co-expression cluster network

  Language:R2

• cran/clusterGeneration

  :exclamation: This is a read-only mirror of the CRAN R package repository. clusterGeneration — Random Cluster Generation (with Specified Degree of Separation)

  Language:R11

• AOHD/EPSplorer

  Program which takes .fasta files of genomes and detects exopolysaccharide (EPS) gene clusters, visualising them using gene arrows from gggenes.

  Language:R1

• medema-group/bigslice

  A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data

  Language:Python7238

• genescf/GeneSCF

  Gene Set Clustering based on Functional annotation

  Language:Perl215

• gamcil/clinker

  Gene cluster comparison figure generator

  Language:Python52571

• g-e-kenney/prettyClusters

  Annotation, analysis and illustration of gene clusters

  Language:R72

• dongwei1220/EasySpeciesTree

  Easily construct the ML species tree with single-copy gene shared by different species.

  Language:Python2514