junipertcy/functional-connectivity

Just jotting down what we may need in the future

Opened this issue · 0 comments

  • More user friendly Dandi io (summary of metadata, etc.)
  • At least two State-of-the-art solvers (QUIC, pISTA or gISTA)
  • Module that generate synthetic graphs
    • random
    • core-periphery
    • planted-partition
    • k-core
  • Module that computes a graph's summary statistics
    • mean degree
    • Betti-1 and Betti-2 (treated as a flag complex)
    • "core-ness" (what are these?)
    • Perhaps consider DomiRank?
    • Others??
  • Module for testing the robustness of results
    • #2
    • what regularization parameter to use?
    • Bootstrapping for one mouse's data (to test the robustness of single experiment result)
    • Need to be careful when binning in between behaviors (re-scale, discard, etc)
    • Need a function to throw away low-excitation neurons