Pinned Repositories
afids-validator
Validator for the anatomical fiducial placement protocol
niftyone
Large-scale neuroimaging visualization using FiftyOne
niwrap
gif_your_nifti
How to create fancy GIFs from an MRI brain image
mrtpipelines
Repository to store MRTrix3 tractography pipelines created with Nipype
neurobeer
NeuroBundle Extraction and Evaluation Resource
scattr-ohbm
Analysis of SCATTR workflow for OHBM 2023
scattr
BIDS app for structural connectivity between targeted regions
snakebids
Snakemake + BIDS
OpenBB
Investment Research for Everyone, Everywhere.
kaitj's Repositories
kaitj/afids-validator
Validator for the anatomical fiducial placement protocol
kaitj/kaitj.github.io
jasonkai.com
kaitj/afids-CNN
Automatic localization and identification of salient brain landmarks
kaitj/afids-utils
Utility functions for working with AFIDs data / workflows
kaitj/autobids-newstudy-app
kaitj/bids2table
Efficiently index large-scale BIDS neuroimaging datasets and derivatives
kaitj/bidsapp-helper
Small python-helper package to simplify initialization of BIDS app CLIs with common arguments
kaitj/gen192
192 C-PAC pipeline generator
kaitj/hippunfold
BIDS App for Hippunfold (automated hippocampal unfolding and subfield segmentation)
kaitj/kaitj
kaitj/khanlab.github.io
Khan Lab website
kaitj/labelmerge
Merge label maps
kaitj/NHP-BrainExtraction
kaitj/nhp-dwiproc
BIDS app for performing diffusion processing on NHP dataset(s)
kaitj/nifti-rspy
Sandbox for testing rust+python interfacing
kaitj/niftyone
Large-scale neuroimaging visualization using FiftyOne
kaitj/nilearn
Machine learning for NeuroImaging in Python
kaitj/niwrap
kaitj/nmind-proceedings
This is the repo for the search/details views of NMIND's `/proceedings` path.
kaitj/nmind-standards-checklist
kaitj/nmind.github.io
NMIND website
kaitj/scattr
Snakebids workflow for mapping the subcortical connectome
kaitj/snakebids
Snakemake + BIDS
kaitj/snakedwi
kaitj/styxdocker
Docker runner for Styx
kaitj/styxsingularity
Singularity/Apptainer Runner for Styx compiled wrappers
kaitj/tar2bids
kaitj/template-python-repository
A template repository for Python projects
kaitj/yawp
kaitj/zona-clusters
This repository contains the clinical data (i.e., scores and stimulation volumes) for two deep brain stimulation (DBS) cases of the zona incerta