/gen192

192 C-PAC pipeline generator

Primary LanguagePythonGNU Lesser General Public License v2.1LGPL-2.1

gen192

Build codecov Code style: black L-GPL License pages

192 C-PAC pipeline generator.

Pipelines (4):

  • ABCD
  • CSS
  • fMRIPrep
  • RBC

Pipeline steps (4):

  • Structural
    • Denoising + Brain Extraction
    • Anatomical Registration
  • Functional
    • Despiking + BOLD Mask Generation
    • Co-registration

Connectivity Measures (2):

  • AFNI
  • Nilearn

Nuisance Regression (2):

  • ANTS
  • No nuisance regression
Options Info
4 Pipelines
× 3 Perturbations (other pipelines)
× 4 Pipeline steps
× 2 Connectivity measures
× 2 Nuisance regressions
= 192 Number of pipelines

Installation

Get the newest development version via:

pip install git+https://github.com/childmindresearch/gen192

Usage

gen192 --help

Links or References