Pinned Repositories
SigProfilerClusters
Tool for analyzing the inter-mutational distances between SNV-SNV and INDEL-INDEL mutations. Tool separates mutations into clustered and non-clustered groups on a sample-dependent basis.
SigProfilerExtractor
SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting.
MutSig2CV
MutSig2CV from Lawrence et al. 2014
barcoding-post
Programs for processing data after barcode-identification
neural-enhance
Super Resolution for images using deep learning.
oncokb-annotator
Annotates variants in MAF with OncoKB annotation.
maftools
Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.
kbrar4013's Repositories
kbrar4013/barcoding-post
Programs for processing data after barcode-identification
kbrar4013/neural-enhance
Super Resolution for images using deep learning.