Load GTF

Question

Load GTF

Closed this issue a year ago · 4 comments

Hello!

Is there a way to load a GTF/GFF file to be able to have a gene/transcript track just like IGV or we have to transform these files into a BED file to load it?

Thanks!

Answer 1 · 2023-05-15T10:54:59.000Z

Currently GTF/GFF are not supported. I can add this in the next release though

Answer 2 · 2023-05-15T10:56:34.000Z

That'd be awesome!

I tried converting a gtf into a bed and successfully load it but there's the issue that everything that overlaps is collapsed in the same track instead of being expanded like you can do in IGV.

Answer 3 · 2023-05-15T11:02:46.000Z

I can see that would be annoying. I need to do a bit more work on overlapping features. Igv has some nice ways to collapse and expand features, I think this should also be supported in gw.

Answer 4 · 2023-12-22T14:40:46.000Z

GTF/GFF3 is now supported in v0.9, along with expandable tracks!