dependency hell
antonkulaga opened this issue · 1 comments
antonkulaga commented
You have serios dependency conflicts in your setup. I tried to install it with pip within conda environment for python 3 under latest Linux Mint, here is what I got:
ERROR: Command errored out with exit status 1:
command: /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-fkkyxfs_/scipy/setup.py'"'"'; __file__='"'"'/tmp/pip-install-fkkyxfs_/scipy/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-8ces14gu
cwd: /tmp/pip-install-fkkyxfs_/scipy/
Complete output (1200 lines):
lapack_opt_info:
lapack_mkl_info:
customize UnixCCompiler
libraries mkl_rt not found in ['/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
NOT AVAILABLE
openblas_lapack_info:
customize UnixCCompiler
customize UnixCCompiler
libraries openblas not found in ['/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
NOT AVAILABLE
openblas_clapack_info:
customize UnixCCompiler
customize UnixCCompiler
libraries openblas,lapack not found in ['/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
NOT AVAILABLE
atlas_3_10_threads_info:
Setting PTATLAS=ATLAS
customize UnixCCompiler
libraries lapack_atlas not found in /usr/local/lib
customize UnixCCompiler
libraries tatlas,tatlas not found in /usr/local/lib
customize UnixCCompiler
libraries lapack_atlas not found in /usr/lib64
customize UnixCCompiler
libraries tatlas,tatlas not found in /usr/lib64
customize UnixCCompiler
libraries lapack_atlas not found in /usr/lib
customize UnixCCompiler
libraries tatlas,tatlas not found in /usr/lib
customize UnixCCompiler
libraries lapack_atlas not found in /usr/lib/x86_64-linux-gnu/atlas
customize UnixCCompiler
libraries tatlas,tatlas not found in /usr/lib/x86_64-linux-gnu/atlas
customize UnixCCompiler
libraries lapack_atlas not found in /usr/lib/x86_64-linux-gnu
customize UnixCCompiler
libraries tatlas,tatlas not found in /usr/lib/x86_64-linux-gnu
<class 'numpy.distutils.system_info.atlas_3_10_threads_info'>
NOT AVAILABLE
atlas_3_10_info:
customize UnixCCompiler
libraries lapack_atlas not found in /usr/local/lib
customize UnixCCompiler
libraries satlas,satlas not found in /usr/local/lib
customize UnixCCompiler
libraries lapack_atlas not found in /usr/lib64
customize UnixCCompiler
libraries satlas,satlas not found in /usr/lib64
customize UnixCCompiler
libraries lapack_atlas not found in /usr/lib
customize UnixCCompiler
libraries satlas,satlas not found in /usr/lib
customize UnixCCompiler
libraries lapack_atlas not found in /usr/lib/x86_64-linux-gnu/atlas
customize UnixCCompiler
libraries satlas,satlas not found in /usr/lib/x86_64-linux-gnu/atlas
customize UnixCCompiler
libraries lapack_atlas not found in /usr/lib/x86_64-linux-gnu
customize UnixCCompiler
libraries satlas,satlas not found in /usr/lib/x86_64-linux-gnu
<class 'numpy.distutils.system_info.atlas_3_10_info'>
NOT AVAILABLE
atlas_threads_info:
Setting PTATLAS=ATLAS
customize UnixCCompiler
libraries lapack_atlas not found in /usr/local/lib
customize UnixCCompiler
libraries ptf77blas,ptcblas,atlas not found in /usr/local/lib
customize UnixCCompiler
libraries lapack_atlas not found in /usr/lib64
customize UnixCCompiler
libraries ptf77blas,ptcblas,atlas not found in /usr/lib64
customize UnixCCompiler
libraries lapack_atlas not found in /usr/lib
customize UnixCCompiler
libraries ptf77blas,ptcblas,atlas not found in /usr/lib
customize UnixCCompiler
libraries lapack_atlas not found in /usr/lib/x86_64-linux-gnu/atlas
customize UnixCCompiler
libraries ptf77blas,ptcblas,atlas not found in /usr/lib/x86_64-linux-gnu/atlas
customize UnixCCompiler
libraries lapack_atlas not found in /usr/lib/x86_64-linux-gnu
customize UnixCCompiler
libraries ptf77blas,ptcblas,atlas not found in /usr/lib/x86_64-linux-gnu
<class 'numpy.distutils.system_info.atlas_threads_info'>
NOT AVAILABLE
atlas_info:
customize UnixCCompiler
libraries lapack_atlas not found in /usr/local/lib
customize UnixCCompiler
libraries f77blas,cblas,atlas not found in /usr/local/lib
customize UnixCCompiler
libraries lapack_atlas not found in /usr/lib64
customize UnixCCompiler
libraries f77blas,cblas,atlas not found in /usr/lib64
customize UnixCCompiler
libraries lapack_atlas not found in /usr/lib
customize UnixCCompiler
libraries f77blas,cblas,atlas not found in /usr/lib
customize UnixCCompiler
libraries lapack_atlas not found in /usr/lib/x86_64-linux-gnu/atlas
customize UnixCCompiler
libraries f77blas,cblas,atlas not found in /usr/lib/x86_64-linux-gnu/atlas
customize UnixCCompiler
libraries lapack_atlas not found in /usr/lib/x86_64-linux-gnu
customize UnixCCompiler
libraries f77blas,cblas,atlas not found in /usr/lib/x86_64-linux-gnu
<class 'numpy.distutils.system_info.atlas_info'>
NOT AVAILABLE
accelerate_info:
NOT AVAILABLE
/usr/lib/python3/dist-packages/numpy/distutils/system_info.py:638: UserWarning:
Atlas (http://math-atlas.sourceforge.net/) libraries not found.
Directories to search for the libraries can be specified in the
numpy/distutils/site.cfg file (section [atlas]) or by setting
the ATLAS environment variable.
self.calc_info()
lapack_info:
customize UnixCCompiler
customize UnixCCompiler
FOUND:
libraries = ['lapack', 'lapack']
library_dirs = ['/usr/lib/x86_64-linux-gnu']
language = f77
blas_info:
customize UnixCCompiler
customize UnixCCompiler
C compiler: x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC
creating /tmp/tmpgaxncj_w/tmp
creating /tmp/tmpgaxncj_w/tmp/tmpgaxncj_w
compile options: '-I/usr/local/include -I/usr/include -c'
x86_64-linux-gnu-gcc: /tmp/tmpgaxncj_w/source.c
x86_64-linux-gnu-gcc -pthread /tmp/tmpgaxncj_w/tmp/tmpgaxncj_w/source.o -lcblas -o /tmp/tmpgaxncj_w/a.out
/usr/bin/ld: cannot find -lcblas
collect2: error: ld returned 1 exit status
x86_64-linux-gnu-gcc -pthread /tmp/tmpgaxncj_w/tmp/tmpgaxncj_w/source.o -lblas -o /tmp/tmpgaxncj_w/a.out
customize UnixCCompiler
FOUND:
libraries = ['blas', 'blas']
library_dirs = ['/usr/lib/x86_64-linux-gnu']
include_dirs = ['/usr/local/include', '/usr/include']
language = c
define_macros = [('HAVE_CBLAS', None)]
FOUND:
define_macros = [('NO_ATLAS_INFO', 1), ('HAVE_CBLAS', None)]
libraries = ['lapack', 'lapack', 'blas', 'blas']
library_dirs = ['/usr/lib/x86_64-linux-gnu']
language = c
include_dirs = ['/usr/local/include', '/usr/include']
Running from scipy source directory.
non-existing path in 'scipy/integrate': 'quadpack.h'
Splitting linalg.interpolative Fortran source files
/usr/lib/python3/dist-packages/numpy/distutils/system_info.py:730: UserWarning: Specified path /usr/local/include/python3.7m is invalid.
return self.get_paths(self.section, key)
blas_opt_info:
blas_mkl_info:
customize UnixCCompiler
libraries mkl_rt not found in ['/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
NOT AVAILABLE
blis_info:
customize UnixCCompiler
libraries blis not found in ['/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
NOT AVAILABLE
openblas_info:
customize UnixCCompiler
customize UnixCCompiler
libraries openblas not found in ['/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
NOT AVAILABLE
atlas_3_10_blas_threads_info:
Setting PTATLAS=ATLAS
customize UnixCCompiler
libraries tatlas not found in ['/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/x86_64-linux-gnu/atlas', '/usr/lib/x86_64-linux-gnu']
NOT AVAILABLE
atlas_3_10_blas_info:
customize UnixCCompiler
libraries satlas not found in ['/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/x86_64-linux-gnu/atlas', '/usr/lib/x86_64-linux-gnu']
NOT AVAILABLE
atlas_blas_threads_info:
Setting PTATLAS=ATLAS
customize UnixCCompiler
libraries ptf77blas,ptcblas,atlas not found in ['/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/x86_64-linux-gnu/atlas', '/usr/lib/x86_64-linux-gnu']
NOT AVAILABLE
atlas_blas_info:
customize UnixCCompiler
libraries f77blas,cblas,atlas not found in ['/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/x86_64-linux-gnu/atlas', '/usr/lib/x86_64-linux-gnu']
NOT AVAILABLE
/usr/lib/python3/dist-packages/numpy/distutils/system_info.py:638: UserWarning:
Atlas (http://math-atlas.sourceforge.net/) libraries not found.
Directories to search for the libraries can be specified in the
numpy/distutils/site.cfg file (section [atlas]) or by setting
the ATLAS environment variable.
self.calc_info()
FOUND:
define_macros = [('NO_ATLAS_INFO', 1), ('HAVE_CBLAS', None)]
libraries = ['blas', 'blas']
library_dirs = ['/usr/lib/x86_64-linux-gnu']
include_dirs = ['/usr/local/include', '/usr/include']
language = c
non-existing path in 'scipy/sparse': 'sparsetools/sparsetools_impl.h'
non-existing path in 'scipy/sparse': 'sparsetools/bsr_impl.h'
non-existing path in 'scipy/sparse': 'sparsetools/csc_impl.h'
non-existing path in 'scipy/sparse': 'sparsetools/csr_impl.h'
non-existing path in 'scipy/sparse': 'sparsetools/other_impl.h'
running bdist_wheel
running build
running config_cc
unifing config_cc, config, build_clib, build_ext, build commands --compiler options
running config_fc
unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options
running build_src
build_src
building py_modules sources
creating build
creating build/src.linux-x86_64-3.7
creating build/src.linux-x86_64-3.7/scipy
building library "dfftpack" sources
building library "fftpack" sources
building library "mach" sources
building library "quadpack" sources
building library "odepack" sources
building library "dop" sources
building library "fitpack" sources
building library "fwrappers" sources
building library "odrpack" sources
building library "minpack" sources
building library "rootfind" sources
building library "superlu_src" sources
building library "arpack_scipy" sources
building library "sc_c_misc" sources
building library "sc_cephes" sources
building library "sc_mach" sources
building library "sc_amos" sources
building library "sc_cdf" sources
building library "sc_specfun" sources
building library "statlib" sources
building extension "scipy.cluster._vq" sources
building extension "scipy.cluster._hierarchy" sources
building extension "scipy.fftpack._fftpack" sources
creating build/src.linux-x86_64-3.7/scipy/fftpack
creating build/src.linux-x86_64-3.7/scipy/fftpack/src
conv_template:> build/src.linux-x86_64-3.7/scipy/fftpack/src/dct.c
conv_template:> build/src.linux-x86_64-3.7/scipy/fftpack/src/dst.c
f2py options: []
f2py: scipy/fftpack/fftpack.pyf
Reading fortran codes...
Reading file 'scipy/fftpack/fftpack.pyf' (format:free)
Line #86 in scipy/fftpack/fftpack.pyf:" /* Single precision version */ "
crackline:2: No pattern for line
Post-processing...
Block: _fftpack
Block: zfft
Block: drfft
Block: zrfft
Block: zfftnd
Block: destroy_zfft_cache
Block: destroy_zfftnd_cache
Block: destroy_drfft_cache
Block: cfft
Block: rfft
Block: crfft
Block: cfftnd
Block: destroy_cfft_cache
Block: destroy_cfftnd_cache
Block: destroy_rfft_cache
Block: ddct1
Block: ddct2
Block: ddct3
Block: dct1
Block: dct2
Block: dct3
Block: destroy_ddct2_cache
Block: destroy_ddct1_cache
Block: destroy_dct2_cache
Block: destroy_dct1_cache
Block: ddst1
Block: ddst2
Block: ddst3
Block: dst1
Block: dst2
Block: dst3
Block: destroy_ddst2_cache
Block: destroy_ddst1_cache
Block: destroy_dst2_cache
Block: destroy_dst1_cache
Post-processing (stage 2)...
Building modules...
Building module "_fftpack"...
Constructing wrapper function "zfft"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
y = zfft(x,[n,direction,normalize,overwrite_x])
Constructing wrapper function "drfft"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
y = drfft(x,[n,direction,normalize,overwrite_x])
Constructing wrapper function "zrfft"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
y = zrfft(x,[n,direction,normalize,overwrite_x])
Constructing wrapper function "zfftnd"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
y = zfftnd(x,[s,direction,normalize,overwrite_x])
Constructing wrapper function "destroy_zfft_cache"...
destroy_zfft_cache()
Constructing wrapper function "destroy_zfftnd_cache"...
destroy_zfftnd_cache()
Constructing wrapper function "destroy_drfft_cache"...
destroy_drfft_cache()
Constructing wrapper function "cfft"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
y = cfft(x,[n,direction,normalize,overwrite_x])
Constructing wrapper function "rfft"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
y = rfft(x,[n,direction,normalize,overwrite_x])
Constructing wrapper function "crfft"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
y = crfft(x,[n,direction,normalize,overwrite_x])
Constructing wrapper function "cfftnd"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
y = cfftnd(x,[s,direction,normalize,overwrite_x])
Constructing wrapper function "destroy_cfft_cache"...
destroy_cfft_cache()
Constructing wrapper function "destroy_cfftnd_cache"...
destroy_cfftnd_cache()
Constructing wrapper function "destroy_rfft_cache"...
destroy_rfft_cache()
Constructing wrapper function "ddct1"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
y = ddct1(x,[n,normalize,overwrite_x])
Constructing wrapper function "ddct2"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
y = ddct2(x,[n,normalize,overwrite_x])
Constructing wrapper function "ddct3"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
y = ddct3(x,[n,normalize,overwrite_x])
Constructing wrapper function "dct1"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
y = dct1(x,[n,normalize,overwrite_x])
Constructing wrapper function "dct2"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
y = dct2(x,[n,normalize,overwrite_x])
Constructing wrapper function "dct3"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
y = dct3(x,[n,normalize,overwrite_x])
Constructing wrapper function "destroy_ddct2_cache"...
destroy_ddct2_cache()
Constructing wrapper function "destroy_ddct1_cache"...
destroy_ddct1_cache()
Constructing wrapper function "destroy_dct2_cache"...
destroy_dct2_cache()
Constructing wrapper function "destroy_dct1_cache"...
destroy_dct1_cache()
Constructing wrapper function "ddst1"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
y = ddst1(x,[n,normalize,overwrite_x])
Constructing wrapper function "ddst2"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
y = ddst2(x,[n,normalize,overwrite_x])
Constructing wrapper function "ddst3"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
y = ddst3(x,[n,normalize,overwrite_x])
Constructing wrapper function "dst1"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
y = dst1(x,[n,normalize,overwrite_x])
Constructing wrapper function "dst2"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
y = dst2(x,[n,normalize,overwrite_x])
Constructing wrapper function "dst3"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
y = dst3(x,[n,normalize,overwrite_x])
Constructing wrapper function "destroy_ddst2_cache"...
destroy_ddst2_cache()
Constructing wrapper function "destroy_ddst1_cache"...
destroy_ddst1_cache()
Constructing wrapper function "destroy_dst2_cache"...
destroy_dst2_cache()
Constructing wrapper function "destroy_dst1_cache"...
destroy_dst1_cache()
Wrote C/API module "_fftpack" to file "build/src.linux-x86_64-3.7/scipy/fftpack/_fftpackmodule.c"
adding 'build/src.linux-x86_64-3.7/build/src.linux-x86_64-3.7/scipy/fftpack/fortranobject.c' to sources.
adding 'build/src.linux-x86_64-3.7/build/src.linux-x86_64-3.7/scipy/fftpack' to include_dirs.
creating build/src.linux-x86_64-3.7/build
creating build/src.linux-x86_64-3.7/build/src.linux-x86_64-3.7
creating build/src.linux-x86_64-3.7/build/src.linux-x86_64-3.7/scipy
creating build/src.linux-x86_64-3.7/build/src.linux-x86_64-3.7/scipy/fftpack
copying /usr/lib/python3/dist-packages/numpy/f2py/src/fortranobject.c -> build/src.linux-x86_64-3.7/build/src.linux-x86_64-3.7/scipy/fftpack
copying /usr/lib/python3/dist-packages/numpy/f2py/src/fortranobject.h -> build/src.linux-x86_64-3.7/build/src.linux-x86_64-3.7/scipy/fftpack
building extension "scipy.fftpack.convolve" sources
f2py options: []
f2py: scipy/fftpack/convolve.pyf
Reading fortran codes...
Reading file 'scipy/fftpack/convolve.pyf' (format:free)
Post-processing...
Block: convolve__user__routines
Block: kernel_func
Block: convolve
Block: init_convolution_kernel
In: scipy/fftpack/convolve.pyf:convolve:unknown_interface:init_convolution_kernel
get_useparameters: no module convolve__user__routines info used by init_convolution_kernel
Block: destroy_convolve_cache
Block: convolve
Block: convolve_z
Post-processing (stage 2)...
Building modules...
Constructing call-back function "cb_kernel_func_in_convolve__user__routines"
def kernel_func(k): return kernel_func
Building module "convolve"...
Constructing wrapper function "init_convolution_kernel"...
omega = init_convolution_kernel(n,kernel_func,[d,zero_nyquist,kernel_func_extra_args])
Constructing wrapper function "destroy_convolve_cache"...
destroy_convolve_cache()
Constructing wrapper function "convolve"...
y = convolve(x,omega,[swap_real_imag,overwrite_x])
Constructing wrapper function "convolve_z"...
y = convolve_z(x,omega_real,omega_imag,[overwrite_x])
Wrote C/API module "convolve" to file "build/src.linux-x86_64-3.7/scipy/fftpack/convolvemodule.c"
adding 'build/src.linux-x86_64-3.7/build/src.linux-x86_64-3.7/scipy/fftpack/fortranobject.c' to sources.
adding 'build/src.linux-x86_64-3.7/build/src.linux-x86_64-3.7/scipy/fftpack' to include_dirs.
building extension "scipy.integrate._quadpack" sources
building extension "scipy.integrate._odepack" sources
building extension "scipy.integrate.vode" sources
creating build/src.linux-x86_64-3.7/scipy/integrate
f2py options: []
f2py: scipy/integrate/vode.pyf
Reading fortran codes...
Reading file 'scipy/integrate/vode.pyf' (format:free)
Post-processing...
Block: dvode__user__routines
Block: dvode_user_interface
Block: f
Block: jac
Block: zvode__user__routines
Block: zvode_user_interface
Block: f
Block: jac
Block: vode
Block: dvode
In: scipy/integrate/vode.pyf:vode:unknown_interface:dvode
get_useparameters: no module dvode__user__routines info used by dvode
Block: zvode
In: scipy/integrate/vode.pyf:vode:unknown_interface:zvode
get_useparameters: no module zvode__user__routines info used by zvode
Post-processing (stage 2)...
Building modules...
Constructing call-back function "cb_f_in_dvode__user__routines"
def f(t,y): return ydot
Constructing call-back function "cb_jac_in_dvode__user__routines"
def jac(t,y): return jac
Constructing call-back function "cb_f_in_zvode__user__routines"
def f(t,y): return ydot
Constructing call-back function "cb_jac_in_zvode__user__routines"
def jac(t,y): return jac
Building module "vode"...
Constructing wrapper function "dvode"...
warning: callstatement is defined without callprotoargument
getarrdims:warning: assumed shape array, using 0 instead of '*'
getarrdims:warning: assumed shape array, using 0 instead of '*'
y,t,istate = dvode(f,jac,y,t,tout,rtol,atol,itask,istate,rwork,iwork,mf,[f_extra_args,jac_extra_args,overwrite_y])
Constructing wrapper function "zvode"...
warning: callstatement is defined without callprotoargument
getarrdims:warning: assumed shape array, using 0 instead of '*'
getarrdims:warning: assumed shape array, using 0 instead of '*'
y,t,istate = zvode(f,jac,y,t,tout,rtol,atol,itask,istate,zwork,rwork,iwork,mf,[f_extra_args,jac_extra_args,overwrite_y])
Wrote C/API module "vode" to file "build/src.linux-x86_64-3.7/scipy/integrate/vodemodule.c"
adding 'build/src.linux-x86_64-3.7/build/src.linux-x86_64-3.7/scipy/integrate/fortranobject.c' to sources.
adding 'build/src.linux-x86_64-3.7/build/src.linux-x86_64-3.7/scipy/integrate' to include_dirs.
creating build/src.linux-x86_64-3.7/build/src.linux-x86_64-3.7/scipy/integrate
copying /usr/lib/python3/dist-packages/numpy/f2py/src/fortranobject.c -> build/src.linux-x86_64-3.7/build/src.linux-x86_64-3.7/scipy/integrate
copying /usr/lib/python3/dist-packages/numpy/f2py/src/fortranobject.h -> build/src.linux-x86_64-3.7/build/src.linux-x86_64-3.7/scipy/integrate
building extension "scipy.integrate.lsoda" sources
f2py options: []
f2py: scipy/integrate/lsoda.pyf
Reading fortran codes...
Reading file 'scipy/integrate/lsoda.pyf' (format:free)
Post-processing...
Block: lsoda__user__routines
Block: lsoda_user_interface
Block: f
Block: jac
Block: lsoda
Block: lsoda
In: scipy/integrate/lsoda.pyf:lsoda:unknown_interface:lsoda
get_useparameters: no module lsoda__user__routines info used by lsoda
Post-processing (stage 2)...
Building modules...
Constructing call-back function "cb_f_in_lsoda__user__routines"
def f(t,y): return ydot
Constructing call-back function "cb_jac_in_lsoda__user__routines"
def jac(t,y): return jac
Building module "lsoda"...
Constructing wrapper function "lsoda"...
warning: callstatement is defined without callprotoargument
getarrdims:warning: assumed shape array, using 0 instead of '*'
getarrdims:warning: assumed shape array, using 0 instead of '*'
y,t,istate = lsoda(f,y,t,tout,rtol,atol,itask,istate,rwork,iwork,jac,jt,[f_extra_args,overwrite_y,jac_extra_args])
Wrote C/API module "lsoda" to file "build/src.linux-x86_64-3.7/scipy/integrate/lsodamodule.c"
adding 'build/src.linux-x86_64-3.7/build/src.linux-x86_64-3.7/scipy/integrate/fortranobject.c' to sources.
adding 'build/src.linux-x86_64-3.7/build/src.linux-x86_64-3.7/scipy/integrate' to include_dirs.
building extension "scipy.integrate._dop" sources
f2py options: []
f2py: scipy/integrate/dop.pyf
Reading fortran codes...
Reading file 'scipy/integrate/dop.pyf' (format:free)
Post-processing...
Block: __user__routines
Block: fcn
Block: solout
Block: _dop
Block: dopri5
In: scipy/integrate/dop.pyf:_dop:unknown_interface:dopri5
get_useparameters: no module __user__routines info used by dopri5
Block: dop853
In: scipy/integrate/dop.pyf:_dop:unknown_interface:dop853
get_useparameters: no module __user__routines info used by dop853
Post-processing (stage 2)...
Building modules...
Constructing call-back function "cb_fcn_in___user__routines"
def fcn(x,y): return f
Constructing call-back function "cb_solout_in___user__routines"
def solout(nr,xold,x,y,con,icomp,[nd]): return irtn
Building module "_dop"...
Constructing wrapper function "dopri5"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
getarrdims:warning: assumed shape array, using 0 instead of '*'
getarrdims:warning: assumed shape array, using 0 instead of '*'
getarrdims:warning: assumed shape array, using 0 instead of '*'
x,y,iwork,idid = dopri5(fcn,x,y,xend,rtol,atol,solout,iout,work,iwork,[fcn_extra_args,overwrite_y,solout_extra_args])
Constructing wrapper function "dop853"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
getarrdims:warning: assumed shape array, using 0 instead of '*'
getarrdims:warning: assumed shape array, using 0 instead of '*'
getarrdims:warning: assumed shape array, using 0 instead of '*'
x,y,iwork,idid = dop853(fcn,x,y,xend,rtol,atol,solout,iout,work,iwork,[fcn_extra_args,overwrite_y,solout_extra_args])
Wrote C/API module "_dop" to file "build/src.linux-x86_64-3.7/scipy/integrate/_dopmodule.c"
adding 'build/src.linux-x86_64-3.7/build/src.linux-x86_64-3.7/scipy/integrate/fortranobject.c' to sources.
adding 'build/src.linux-x86_64-3.7/build/src.linux-x86_64-3.7/scipy/integrate' to include_dirs.
building extension "scipy.integrate._test_multivariate" sources
building extension "scipy.integrate._test_odeint_banded" sources
f2py options: []
f2py:> build/src.linux-x86_64-3.7/scipy/integrate/_test_odeint_bandedmodule.c
Reading fortran codes...
Reading file 'scipy/integrate/tests/banded5x5.f' (format:fix,strict)
Post-processing...
Block: _test_odeint_banded
Block: jacobian
Block: getbands
Block: banded5x5
Block: banded5x5_jac
Block: banded5x5_bjac
Block: banded5x5_solve
Post-processing (stage 2)...
Building modules...
Building module "_test_odeint_banded"...
Constructing wrapper function "getbands"...
jac = getbands()
Constructing wrapper function "banded5x5"...
banded5x5(t,y,f,[n])
Constructing wrapper function "banded5x5_jac"...
banded5x5_jac(t,y,ml,mu,jac,[n,nrowpd])
Constructing wrapper function "banded5x5_bjac"...
banded5x5_bjac(t,y,ml,mu,bjac,[n,nrowpd])
Constructing wrapper function "banded5x5_solve"...
nst,nfe,nje = banded5x5_solve(y,nsteps,dt,jt)
Constructing COMMON block support for "jac"...
bands
Wrote C/API module "_test_odeint_banded" to file "build/src.linux-x86_64-3.7/scipy/integrate/_test_odeint_bandedmodule.c"
Fortran 77 wrappers are saved to "build/src.linux-x86_64-3.7/scipy/integrate/_test_odeint_banded-f2pywrappers.f"
adding 'build/src.linux-x86_64-3.7/build/src.linux-x86_64-3.7/scipy/integrate/fortranobject.c' to sources.
adding 'build/src.linux-x86_64-3.7/build/src.linux-x86_64-3.7/scipy/integrate' to include_dirs.
adding 'build/src.linux-x86_64-3.7/scipy/integrate/_test_odeint_banded-f2pywrappers.f' to sources.
building extension "scipy.interpolate.interpnd" sources
building extension "scipy.interpolate._ppoly" sources
building extension "scipy.interpolate._bspl" sources
building extension "scipy.interpolate._fitpack" sources
building extension "scipy.interpolate.dfitpack" sources
creating build/src.linux-x86_64-3.7/scipy/interpolate
creating build/src.linux-x86_64-3.7/scipy/interpolate/src
f2py options: []
f2py: scipy/interpolate/src/fitpack.pyf
Reading fortran codes...
Reading file 'scipy/interpolate/src/fitpack.pyf' (format:free)
Post-processing...
Block: dfitpack
Block: fpchec
Block: splev
Block: splder
Block: splint
Block: sproot
Block: spalde
Block: curfit
Block: percur
Block: parcur
Block: fpcurf0
Block: fpcurf1
Block: fpcurfm1
Block: bispev
Block: parder
Block: bispeu
Block: pardeu
Block: surfit_smth
Block: surfit_lsq
Block: spherfit_smth
Block: spherfit_lsq
Block: regrid_smth
Block: regrid_smth_spher
Block: dblint
Post-processing (stage 2)...
Building modules...
Building module "dfitpack"...
Constructing wrapper function "fpchec"...
ier = fpchec(x,t,k)
Constructing wrapper function "splev"...
y = splev(t,c,k,x,[e])
Constructing wrapper function "splder"...
y = splder(t,c,k,x,[nu,e])
Creating wrapper for Fortran function "splint"("splint")...
Constructing wrapper function "splint"...
splint = splint(t,c,k,a,b)
Constructing wrapper function "sproot"...
zero,m,ier = sproot(t,c,[mest])
Constructing wrapper function "spalde"...
d,ier = spalde(t,c,k,x)
Constructing wrapper function "curfit"...
n,c,fp,ier = curfit(iopt,x,y,w,t,wrk,iwrk,[xb,xe,k,s])
Constructing wrapper function "percur"...
n,c,fp,ier = percur(iopt,x,y,w,t,wrk,iwrk,[k,s])
Constructing wrapper function "parcur"...
n,c,fp,ier = parcur(iopt,ipar,idim,u,x,w,ub,ue,t,wrk,iwrk,[k,s])
Constructing wrapper function "fpcurf0"...
x,y,w,xb,xe,k,s,n,t,c,fp,fpint,nrdata,ier = fpcurf0(x,y,k,[w,xb,xe,s,nest])
Constructing wrapper function "fpcurf1"...
x,y,w,xb,xe,k,s,n,t,c,fp,fpint,nrdata,ier = fpcurf1(x,y,w,xb,xe,k,s,n,t,c,fp,fpint,nrdata,ier,[overwrite_x,overwrite_y,overwrite_w,overwrite_t,overwrite_c,overwrite_fpint,overwrite_nrdata])
Constructing wrapper function "fpcurfm1"...
x,y,w,xb,xe,k,s,n,t,c,fp,fpint,nrdata,ier = fpcurfm1(x,y,k,t,[w,xb,xe,overwrite_t])
Constructing wrapper function "bispev"...
z,ier = bispev(tx,ty,c,kx,ky,x,y)
Constructing wrapper function "parder"...
z,ier = parder(tx,ty,c,kx,ky,nux,nuy,x,y)
Constructing wrapper function "bispeu"...
z,ier = bispeu(tx,ty,c,kx,ky,x,y)
Constructing wrapper function "pardeu"...
z,ier = pardeu(tx,ty,c,kx,ky,nux,nuy,x,y)
Constructing wrapper function "surfit_smth"...
nx,tx,ny,ty,c,fp,wrk1,ier = surfit_smth(x,y,z,[w,xb,xe,yb,ye,kx,ky,s,nxest,nyest,eps,lwrk2])
Constructing wrapper function "surfit_lsq"...
tx,ty,c,fp,ier = surfit_lsq(x,y,z,tx,ty,[w,xb,xe,yb,ye,kx,ky,eps,lwrk2,overwrite_tx,overwrite_ty])
Constructing wrapper function "spherfit_smth"...
nt,tt,np,tp,c,fp,ier = spherfit_smth(teta,phi,r,[w,s,eps])
Constructing wrapper function "spherfit_lsq"...
tt,tp,c,fp,ier = spherfit_lsq(teta,phi,r,tt,tp,[w,eps,overwrite_tt,overwrite_tp])
Constructing wrapper function "regrid_smth"...
nx,tx,ny,ty,c,fp,ier = regrid_smth(x,y,z,[xb,xe,yb,ye,kx,ky,s])
Constructing wrapper function "regrid_smth_spher"...
nu,tu,nv,tv,c,fp,ier = regrid_smth_spher(iopt,ider,u,v,r,[r0,r1,s])
Creating wrapper for Fortran function "dblint"("dblint")...
Constructing wrapper function "dblint"...
dblint = dblint(tx,ty,c,kx,ky,xb,xe,yb,ye)
Wrote C/API module "dfitpack" to file "build/src.linux-x86_64-3.7/scipy/interpolate/src/dfitpackmodule.c"
Fortran 77 wrappers are saved to "build/src.linux-x86_64-3.7/scipy/interpolate/src/dfitpack-f2pywrappers.f"
adding 'build/src.linux-x86_64-3.7/build/src.linux-x86_64-3.7/scipy/interpolate/src/fortranobject.c' to sources.
adding 'build/src.linux-x86_64-3.7/build/src.linux-x86_64-3.7/scipy/interpolate/src' to include_dirs.
creating build/src.linux-x86_64-3.7/build/src.linux-x86_64-3.7/scipy/interpolate
creating build/src.linux-x86_64-3.7/build/src.linux-x86_64-3.7/scipy/interpolate/src
copying /usr/lib/python3/dist-packages/numpy/f2py/src/fortranobject.c -> build/src.linux-x86_64-3.7/build/src.linux-x86_64-3.7/scipy/interpolate/src
copying /usr/lib/python3/dist-packages/numpy/f2py/src/fortranobject.h -> build/src.linux-x86_64-3.7/build/src.linux-x86_64-3.7/scipy/interpolate/src
adding 'build/src.linux-x86_64-3.7/scipy/interpolate/src/dfitpack-f2pywrappers.f' to sources.
building extension "scipy.interpolate._interpolate" sources
building extension "scipy.io.matlab.streams" sources
building extension "scipy.io.matlab.mio_utils" sources
building extension "scipy.io.matlab.mio5_utils" sources
building extension "scipy.linalg._fblas" sources
creating build/src.linux-x86_64-3.7/scipy/linalg
from_template:> build/src.linux-x86_64-3.7/scipy/linalg/fblas.pyf
Including file scipy/linalg/fblas_l1.pyf.src
Including file scipy/linalg/fblas_l2.pyf.src
Including file scipy/linalg/fblas_l3.pyf.src
Mismatch in number of replacements (base <prefix=s,d,c,z>) for <__l1=->. Ignoring.
Mismatch in number of replacements (base <prefix6=s,d,c,z,c,z>) for <prefix=s,d,c,z>. Ignoring.
creating build/src.linux-x86_64-3.7/build/src.linux-x86_64-3.7/scipy/linalg
f2py options: []
f2py: build/src.linux-x86_64-3.7/scipy/linalg/fblas.pyf
Reading fortran codes...
Reading file 'build/src.linux-x86_64-3.7/scipy/linalg/fblas.pyf' (format:free)
Post-processing...
Block: _fblas
Block: srotg
Block: drotg
Block: crotg
Block: zrotg
Block: srotmg
Block: drotmg
Block: srot
Block: drot
Block: csrot
Block: zdrot
Block: srotm
Block: drotm
Block: sswap
Block: dswap
Block: cswap
Block: zswap
Block: sscal
Block: dscal
Block: cscal
Block: zscal
Block: csscal
Block: zdscal
Block: scopy
Block: dcopy
Block: ccopy
Block: zcopy
Block: saxpy
Block: daxpy
Block: caxpy
Block: zaxpy
Block: sdot
Block: ddot
Block: cdotu
Block: zdotu
Block: cdotc
Block: zdotc
Block: snrm2
Block: scnrm2
Block: dnrm2
Block: dznrm2
Block: sasum
Block: scasum
Block: dasum
Block: dzasum
Block: isamax
Block: idamax
Block: icamax
Block: izamax
Block: sgemv
Block: dgemv
Block: cgemv
Block: zgemv
Block: ssymv
Block: dsymv
Block: chemv
Block: zhemv
Block: strmv
Block: dtrmv
Block: ctrmv
Block: ztrmv
Block: sger
Block: dger
Block: cgeru
Block: zgeru
Block: cgerc
Block: zgerc
Block: ssyr
Block: dsyr
Block: csyr
Block: zsyr
Block: cher
Block: zher
Block: ssyr2
Block: dsyr2
Block: cher2
Block: zher2
Block: sgemm
Block: dgemm
Block: cgemm
Block: zgemm
Block: ssymm
Block: dsymm
Block: csymm
Block: zsymm
Block: chemm
Block: zhemm
Block: ssyrk
Block: dsyrk
Block: csyrk
Block: zsyrk
Block: cherk
Block: zherk
Block: ssyr2k
Block: dsyr2k
Block: csyr2k
Block: zsyr2k
Block: cher2k
Block: zher2k
Block: strmm
Block: dtrmm
Block: ctrmm
Block: ztrmm
Post-processing (stage 2)...
Building modules...
Building module "_fblas"...
Constructing wrapper function "srotg"...
c,s = srotg(a,b)
Constructing wrapper function "drotg"...
c,s = drotg(a,b)
Constructing wrapper function "crotg"...
c,s = crotg(a,b)
Constructing wrapper function "zrotg"...
c,s = zrotg(a,b)
Constructing wrapper function "srotmg"...
param = srotmg(d1,d2,x1,y1)
Constructing wrapper function "drotmg"...
param = drotmg(d1,d2,x1,y1)
Constructing wrapper function "srot"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
getarrdims:warning: assumed shape array, using 0 instead of '*'
x,y = srot(x,y,c,s,[n,offx,incx,offy,incy,overwrite_x,overwrite_y])
Constructing wrapper function "drot"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
getarrdims:warning: assumed shape array, using 0 instead of '*'
x,y = drot(x,y,c,s,[n,offx,incx,offy,incy,overwrite_x,overwrite_y])
Constructing wrapper function "csrot"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
getarrdims:warning: assumed shape array, using 0 instead of '*'
x,y = csrot(x,y,c,s,[n,offx,incx,offy,incy,overwrite_x,overwrite_y])
Constructing wrapper function "zdrot"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
getarrdims:warning: assumed shape array, using 0 instead of '*'
x,y = zdrot(x,y,c,s,[n,offx,incx,offy,incy,overwrite_x,overwrite_y])
Constructing wrapper function "srotm"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
getarrdims:warning: assumed shape array, using 0 instead of '*'
x,y = srotm(x,y,param,[n,offx,incx,offy,incy,overwrite_x,overwrite_y])
Constructing wrapper function "drotm"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
getarrdims:warning: assumed shape array, using 0 instead of '*'
x,y = drotm(x,y,param,[n,offx,incx,offy,incy,overwrite_x,overwrite_y])
Constructing wrapper function "sswap"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
getarrdims:warning: assumed shape array, using 0 instead of '*'
x,y = sswap(x,y,[n,offx,incx,offy,incy])
Constructing wrapper function "dswap"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
getarrdims:warning: assumed shape array, using 0 instead of '*'
x,y = dswap(x,y,[n,offx,incx,offy,incy])
Constructing wrapper function "cswap"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
getarrdims:warning: assumed shape array, using 0 instead of '*'
x,y = cswap(x,y,[n,offx,incx,offy,incy])
Constructing wrapper function "zswap"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
getarrdims:warning: assumed shape array, using 0 instead of '*'
x,y = zswap(x,y,[n,offx,incx,offy,incy])
Constructing wrapper function "sscal"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
x = sscal(a,x,[n,offx,incx])
Constructing wrapper function "dscal"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
x = dscal(a,x,[n,offx,incx])
Constructing wrapper function "cscal"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
x = cscal(a,x,[n,offx,incx])
Constructing wrapper function "zscal"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
x = zscal(a,x,[n,offx,incx])
Constructing wrapper function "csscal"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
x = csscal(a,x,[n,offx,incx,overwrite_x])
Constructing wrapper function "zdscal"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
x = zdscal(a,x,[n,offx,incx,overwrite_x])
Constructing wrapper function "scopy"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
getarrdims:warning: assumed shape array, using 0 instead of '*'
y = scopy(x,y,[n,offx,incx,offy,incy])
Constructing wrapper function "dcopy"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
getarrdims:warning: assumed shape array, using 0 instead of '*'
y = dcopy(x,y,[n,offx,incx,offy,incy])
Constructing wrapper function "ccopy"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
getarrdims:warning: assumed shape array, using 0 instead of '*'
y = ccopy(x,y,[n,offx,incx,offy,incy])
Constructing wrapper function "zcopy"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
getarrdims:warning: assumed shape array, using 0 instead of '*'
y = zcopy(x,y,[n,offx,incx,offy,incy])
Constructing wrapper function "saxpy"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
getarrdims:warning: assumed shape array, using 0 instead of '*'
z = saxpy(x,y,[n,a,offx,incx,offy,incy])
Constructing wrapper function "daxpy"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
getarrdims:warning: assumed shape array, using 0 instead of '*'
z = daxpy(x,y,[n,a,offx,incx,offy,incy])
Constructing wrapper function "caxpy"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
getarrdims:warning: assumed shape array, using 0 instead of '*'
z = caxpy(x,y,[n,a,offx,incx,offy,incy])
Constructing wrapper function "zaxpy"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
getarrdims:warning: assumed shape array, using 0 instead of '*'
z = zaxpy(x,y,[n,a,offx,incx,offy,incy])
Creating wrapper for Fortran function "sdot"("wsdot ")...
Constructing wrapper function "sdot"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
getarrdims:warning: assumed shape array, using 0 instead of '*'
xy = sdot(x,y,[n,offx,incx,offy,incy])
Creating wrapper for Fortran function "ddot"("ddot")...
Constructing wrapper function "ddot"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
getarrdims:warning: assumed shape array, using 0 instead of '*'
xy = ddot(x,y,[n,offx,incx,offy,incy])
Creating wrapper for Fortran function "cdotu"("wcdotu ")...
Constructing wrapper function "cdotu"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
getarrdims:warning: assumed shape array, using 0 instead of '*'
xy = cdotu(x,y,[n,offx,incx,offy,incy])
Creating wrapper for Fortran function "zdotu"("wzdotu ")...
Constructing wrapper function "zdotu"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
getarrdims:warning: assumed shape array, using 0 instead of '*'
xy = zdotu(x,y,[n,offx,incx,offy,incy])
Creating wrapper for Fortran function "cdotc"("wcdotc ")...
Constructing wrapper function "cdotc"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
getarrdims:warning: assumed shape array, using 0 instead of '*'
xy = cdotc(x,y,[n,offx,incx,offy,incy])
Creating wrapper for Fortran function "zdotc"("wzdotc ")...
Constructing wrapper function "zdotc"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
getarrdims:warning: assumed shape array, using 0 instead of '*'
xy = zdotc(x,y,[n,offx,incx,offy,incy])
Creating wrapper for Fortran function "snrm2"("wsnrm2 ")...
Constructing wrapper function "snrm2"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
n2 = snrm2(x,[n,offx,incx])
Creating wrapper for Fortran function "scnrm2"("wscnrm2 ")...
Constructing wrapper function "scnrm2"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
n2 = scnrm2(x,[n,offx,incx])
Creating wrapper for Fortran function "dnrm2"("dnrm2")...
Constructing wrapper function "dnrm2"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
n2 = dnrm2(x,[n,offx,incx])
Creating wrapper for Fortran function "dznrm2"("dznrm2")...
Constructing wrapper function "dznrm2"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
n2 = dznrm2(x,[n,offx,incx])
Creating wrapper for Fortran function "sasum"("wsasum ")...
Constructing wrapper function "sasum"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
s = sasum(x,[n,offx,incx])
Creating wrapper for Fortran function "scasum"("wscasum ")...
Constructing wrapper function "scasum"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
s = scasum(x,[n,offx,incx])
Creating wrapper for Fortran function "dasum"("dasum")...
Constructing wrapper function "dasum"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
s = dasum(x,[n,offx,incx])
Creating wrapper for Fortran function "dzasum"("dzasum")...
Constructing wrapper function "dzasum"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
s = dzasum(x,[n,offx,incx])
Constructing wrapper function "isamax"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
k = isamax(x,[n,offx,incx])
Constructing wrapper function "idamax"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
k = idamax(x,[n,offx,incx])
Constructing wrapper function "icamax"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
k = icamax(x,[n,offx,incx])
Constructing wrapper function "izamax"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
k = izamax(x,[n,offx,incx])
Constructing wrapper function "sgemv"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
y = sgemv(alpha,a,x,[beta,y,offx,incx,offy,incy,trans,overwrite_y])
Constructing wrapper function "dgemv"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
y = dgemv(alpha,a,x,[beta,y,offx,incx,offy,incy,trans,overwrite_y])
Constructing wrapper function "cgemv"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
y = cgemv(alpha,a,x,[beta,y,offx,incx,offy,incy,trans,overwrite_y])
Constructing wrapper function "zgemv"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
y = zgemv(alpha,a,x,[beta,y,offx,incx,offy,incy,trans,overwrite_y])
Constructing wrapper function "ssymv"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
y = ssymv(alpha,a,x,[beta,y,offx,incx,offy,incy,lower,overwrite_y])
Constructing wrapper function "dsymv"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
y = dsymv(alpha,a,x,[beta,y,offx,incx,offy,incy,lower,overwrite_y])
Constructing wrapper function "chemv"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
y = chemv(alpha,a,x,[beta,y,offx,incx,offy,incy,lower,overwrite_y])
Constructing wrapper function "zhemv"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
y = zhemv(alpha,a,x,[beta,y,offx,incx,offy,incy,lower,overwrite_y])
Constructing wrapper function "strmv"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
x = strmv(a,x,[offx,incx,lower,trans,unitdiag,overwrite_x])
Constructing wrapper function "dtrmv"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
x = dtrmv(a,x,[offx,incx,lower,trans,unitdiag,overwrite_x])
Constructing wrapper function "ctrmv"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
x = ctrmv(a,x,[offx,incx,lower,trans,unitdiag,overwrite_x])
Constructing wrapper function "ztrmv"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
x = ztrmv(a,x,[offx,incx,lower,trans,unitdiag,overwrite_x])
Constructing wrapper function "sger"...
a = sger(alpha,x,y,[incx,incy,a,overwrite_x,overwrite_y,overwrite_a])
Constructing wrapper function "dger"...
a = dger(alpha,x,y,[incx,incy,a,overwrite_x,overwrite_y,overwrite_a])
Constructing wrapper function "cgeru"...
a = cgeru(alpha,x,y,[incx,incy,a,overwrite_x,overwrite_y,overwrite_a])
Constructing wrapper function "zgeru"...
a = zgeru(alpha,x,y,[incx,incy,a,overwrite_x,overwrite_y,overwrite_a])
Constructing wrapper function "cgerc"...
a = cgerc(alpha,x,y,[incx,incy,a,overwrite_x,overwrite_y,overwrite_a])
Constructing wrapper function "zgerc"...
a = zgerc(alpha,x,y,[incx,incy,a,overwrite_x,overwrite_y,overwrite_a])
Constructing wrapper function "ssyr"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
a = ssyr(alpha,x,[lower,incx,offx,n,a,overwrite_a])
Constructing wrapper function "dsyr"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
a = dsyr(alpha,x,[lower,incx,offx,n,a,overwrite_a])
Constructing wrapper function "csyr"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
a = csyr(alpha,x,[lower,incx,offx,n,a,overwrite_a])
Constructing wrapper function "zsyr"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
a = zsyr(alpha,x,[lower,incx,offx,n,a,overwrite_a])
Constructing wrapper function "cher"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
a = cher(alpha,x,[lower,incx,offx,n,a,overwrite_a])
Constructing wrapper function "zher"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
a = zher(alpha,x,[lower,incx,offx,n,a,overwrite_a])
Constructing wrapper function "ssyr2"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
getarrdims:warning: assumed shape array, using 0 instead of '*'
a = ssyr2(alpha,x,y,[lower,incx,offx,incy,offy,n,a,overwrite_a])
Constructing wrapper function "dsyr2"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
getarrdims:warning: assumed shape array, using 0 instead of '*'
a = dsyr2(alpha,x,y,[lower,incx,offx,incy,offy,n,a,overwrite_a])
Constructing wrapper function "cher2"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
getarrdims:warning: assumed shape array, using 0 instead of '*'
a = cher2(alpha,x,y,[lower,incx,offx,incy,offy,n,a,overwrite_a])
Constructing wrapper function "zher2"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
getarrdims:warning: assumed shape array, using 0 instead of '*'
a = zher2(alpha,x,y,[lower,incx,offx,incy,offy,n,a,overwrite_a])
Constructing wrapper function "sgemm"...
c = sgemm(alpha,a,b,[beta,c,trans_a,trans_b,overwrite_c])
Constructing wrapper function "dgemm"...
c = dgemm(alpha,a,b,[beta,c,trans_a,trans_b,overwrite_c])
Constructing wrapper function "cgemm"...
c = cgemm(alpha,a,b,[beta,c,trans_a,trans_b,overwrite_c])
Constructing wrapper function "zgemm"...
c = zgemm(alpha,a,b,[beta,c,trans_a,trans_b,overwrite_c])
Constructing wrapper function "ssymm"...
c = ssymm(alpha,a,b,[beta,c,side,lower,overwrite_c])
Constructing wrapper function "dsymm"...
c = dsymm(alpha,a,b,[beta,c,side,lower,overwrite_c])
Constructing wrapper function "csymm"...
c = csymm(alpha,a,b,[beta,c,side,lower,overwrite_c])
Constructing wrapper function "zsymm"...
c = zsymm(alpha,a,b,[beta,c,side,lower,overwrite_c])
Constructing wrapper function "chemm"...
c = chemm(alpha,a,b,[beta,c,side,lower,overwrite_c])
Constructing wrapper function "zhemm"...
c = zhemm(alpha,a,b,[beta,c,side,lower,overwrite_c])
Constructing wrapper function "ssyrk"...
c = ssyrk(alpha,a,[beta,c,trans,lower,overwrite_c])
Constructing wrapper function "dsyrk"...
c = dsyrk(alpha,a,[beta,c,trans,lower,overwrite_c])
Constructing wrapper function "csyrk"...
c = csyrk(alpha,a,[beta,c,trans,lower,overwrite_c])
Constructing wrapper function "zsyrk"...
c = zsyrk(alpha,a,[beta,c,trans,lower,overwrite_c])
Constructing wrapper function "cherk"...
c = cherk(alpha,a,[beta,c,trans,lower,overwrite_c])
Constructing wrapper function "zherk"...
c = zherk(alpha,a,[beta,c,trans,lower,overwrite_c])
Constructing wrapper function "ssyr2k"...
c = ssyr2k(alpha,a,b,[beta,c,trans,lower,overwrite_c])
Constructing wrapper function "dsyr2k"...
c = dsyr2k(alpha,a,b,[beta,c,trans,lower,overwrite_c])
Constructing wrapper function "csyr2k"...
c = csyr2k(alpha,a,b,[beta,c,trans,lower,overwrite_c])
Constructing wrapper function "zsyr2k"...
c = zsyr2k(alpha,a,b,[beta,c,trans,lower,overwrite_c])
Constructing wrapper function "cher2k"...
c = cher2k(alpha,a,b,[beta,c,trans,lower,overwrite_c])
Constructing wrapper function "zher2k"...
c = zher2k(alpha,a,b,[beta,c,trans,lower,overwrite_c])
Constructing wrapper function "strmm"...
b = strmm(alpha,a,b,[side,lower,trans_a,diag,overwrite_b])
Constructing wrapper function "dtrmm"...
b = dtrmm(alpha,a,b,[side,lower,trans_a,diag,overwrite_b])
Constructing wrapper function "ctrmm"...
b = ctrmm(alpha,a,b,[side,lower,trans_a,diag,overwrite_b])
Constructing wrapper function "ztrmm"...
b = ztrmm(alpha,a,b,[side,lower,trans_a,diag,overwrite_b])
Wrote C/API module "_fblas" to file "build/src.linux-x86_64-3.7/build/src.linux-x86_64-3.7/scipy/linalg/_fblasmodule.c"
Fortran 77 wrappers are saved to "build/src.linux-x86_64-3.7/build/src.linux-x86_64-3.7/scipy/linalg/_fblas-f2pywrappers.f"
adding 'build/src.linux-x86_64-3.7/build/src.linux-x86_64-3.7/build/src.linux-x86_64-3.7/scipy/linalg/fortranobject.c' to sources.
adding 'build/src.linux-x86_64-3.7/build/src.linux-x86_64-3.7/build/src.linux-x86_64-3.7/scipy/linalg' to include_dirs.
creating build/src.linux-x86_64-3.7/build/src.linux-x86_64-3.7/build
creating build/src.linux-x86_64-3.7/build/src.linux-x86_64-3.7/build/src.linux-x86_64-3.7
creating build/src.linux-x86_64-3.7/build/src.linux-x86_64-3.7/build/src.linux-x86_64-3.7/scipy
creating build/src.linux-x86_64-3.7/build/src.linux-x86_64-3.7/build/src.linux-x86_64-3.7/scipy/linalg
copying /usr/lib/python3/dist-packages/numpy/f2py/src/fortranobject.c -> build/src.linux-x86_64-3.7/build/src.linux-x86_64-3.7/build/src.linux-x86_64-3.7/scipy/linalg
copying /usr/lib/python3/dist-packages/numpy/f2py/src/fortranobject.h -> build/src.linux-x86_64-3.7/build/src.linux-x86_64-3.7/build/src.linux-x86_64-3.7/scipy/linalg
adding 'build/src.linux-x86_64-3.7/build/src.linux-x86_64-3.7/scipy/linalg/_fblas-f2pywrappers.f' to sources.
building extension "scipy.linalg._flapack" sources
from_template:> build/src.linux-x86_64-3.7/scipy/linalg/flapack.pyf
Including file scipy/linalg/flapack_user.pyf.src
Mismatch in number of replacements (base <prefix=s,d,c,z>) for <__l1=c,z>. Ignoring.
Mismatch in number of replacements (base <prefix=s,d,c,z>) for <__l1=c,z>. Ignoring.
Mismatch in number of replacements (base <prefix2=s,d>) for <__l1=S/D>. Ignoring.
Mismatch in number of replacements (base <prefix2c=c,z>) for <__l1=C/Z>. Ignoring.
Mismatch in number of replacements (base <prefix2=s,d>) for <__l1=S/D>. Ignoring.
Mismatch in number of replacements (base <prefix2c=c,z>) for <__l1=C/Z>. Ignoring.
Mismatch in number of replacements (base <prefix2=s,d>) for <__l1=S/D>. Ignoring.
Mismatch in number of replacements (base <prefix2=s,d>) for <__l1=S/D>. Ignoring.
Mismatch in number of replacements (base <prefix2c=c,z>) for <__l1=C/Z>. Ignoring.
Mismatch in number of replacements (base <prefix2c=c,z>) for <__l1=C/Z>. Ignoring.
f2py options: []
f2py: build/src.linux-x86_64-3.7/scipy/linalg/flapack.pyf
Reading fortran codes...
Reading file 'build/src.linux-x86_64-3.7/scipy/linalg/flapack.pyf' (format:free)
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/tmp/pip-install-fkkyxfs_/scipy/setup.py", line 416, in <module>
setup_package()
File "/tmp/pip-install-fkkyxfs_/scipy/setup.py", line 412, in setup_package
setup(**metadata)
File "/usr/lib/python3/dist-packages/numpy/distutils/core.py", line 171, in setup
return old_setup(**new_attr)
File "/usr/lib/python3/dist-packages/setuptools/__init__.py", line 145, in setup
return distutils.core.setup(**attrs)
File "/usr/lib/python3.7/distutils/core.py", line 148, in setup
dist.run_commands()
File "/usr/lib/python3.7/distutils/dist.py", line 966, in run_commands
self.run_command(cmd)
File "/usr/lib/python3.7/distutils/dist.py", line 985, in run_command
cmd_obj.run()
File "/usr/lib/python3/dist-packages/wheel/bdist_wheel.py", line 188, in run
self.run_command('build')
File "/usr/lib/python3.7/distutils/cmd.py", line 313, in run_command
self.distribution.run_command(command)
File "/usr/lib/python3.7/distutils/dist.py", line 985, in run_command
cmd_obj.run()
File "/usr/lib/python3/dist-packages/numpy/distutils/command/build.py", line 47, in run
old_build.run(self)
File "/usr/lib/python3.7/distutils/command/build.py", line 135, in run
self.run_command(cmd_name)
File "/usr/lib/python3.7/distutils/cmd.py", line 313, in run_command
self.distribution.run_command(command)
File "/usr/lib/python3.7/distutils/dist.py", line 985, in run_command
cmd_obj.run()
File "/usr/lib/python3/dist-packages/numpy/distutils/command/build_src.py", line 148, in run
self.build_sources()
File "/usr/lib/python3/dist-packages/numpy/distutils/command/build_src.py", line 165, in build_sources
self.build_extension_sources(ext)
File "/usr/lib/python3/dist-packages/numpy/distutils/command/build_src.py", line 325, in build_extension_sources
sources = self.f2py_sources(sources, ext)
File "/usr/lib/python3/dist-packages/numpy/distutils/command/build_src.py", line 542, in f2py_sources
+ ['--build-dir', target_dir, source])
File "/usr/lib/python3/dist-packages/numpy/f2py/f2py2e.py", line 425, in run_main
postlist = callcrackfortran(files, options)
File "/usr/lib/python3/dist-packages/numpy/f2py/f2py2e.py", line 329, in callcrackfortran
postlist = crackfortran.crackfortran(files)
File "/usr/lib/python3/dist-packages/numpy/f2py/crackfortran.py", line 3251, in crackfortran
readfortrancode(files, crackline)
File "/usr/lib/python3/dist-packages/numpy/f2py/crackfortran.py", line 501, in readfortrancode
dowithline(finalline)
File "/usr/lib/python3/dist-packages/numpy/f2py/crackfortran.py", line 796, in crackline
analyzeline(m, pat[1], line)
File "/usr/lib/python3/dist-packages/numpy/f2py/crackfortran.py", line 1098, in analyzeline
last_name = updatevars(typespec, selector, attr, edecl)
File "/usr/lib/python3/dist-packages/numpy/f2py/crackfortran.py", line 1542, in updatevars
attrspec = [x.strip() for x in markoutercomma(attrspec).split('@,@')]
File "/usr/lib/python3/dist-packages/numpy/f2py/crackfortran.py", line 833, in markoutercomma
assert not f, repr((f, line, l))
AssertionError: (-1, 'intent(in))', 'intent(in))')
----------------------------------------
ERROR: Failed building wheel for scipy
Running setup.py clean for scipy
ERROR: Command errored out with exit status 1:
command: /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-fkkyxfs_/scipy/setup.py'"'"'; __file__='"'"'/tmp/pip-install-fkkyxfs_/scipy/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all
cwd: /tmp/pip-install-fkkyxfs_/scipy
Complete output (9 lines):
`setup.py clean` is not supported, use one of the following instead:
- `git clean -xdf` (cleans all files)
- `git clean -Xdf` (cleans all versioned files, doesn't touch
files that aren't checked into the git repo)
Add `--force` to your command to use it anyway if you must (unsupported).
----------------------------------------
ERROR: Failed cleaning build dir for scipy
Building wheel for audioread (setup.py) ... done
Created wheel for audioread: filename=audioread-2.1.8-py3-none-any.whl size=23091 sha256=cc09b414b75e71aca5087e94468d5157e6353a302c18b68444391878a025ea28
Stored in directory: /home/antonkulaga/.cache/pip/wheels/cd/85/04/704a589ef8773d1ec1393c4b271a023f929d85ef5317b12d8c
Building wheel for resampy (setup.py) ... done
Created wheel for resampy: filename=resampy-0.2.2-py3-none-any.whl size=320716 sha256=02b47a1dfc371f006aa3649ae949910e9cf15dfe5566360b73d25f0cbc8c7863
Stored in directory: /home/antonkulaga/.cache/pip/wheels/a0/18/0a/8ad18a597d8333a142c9789338a96a6208f1198d290ece356c
Successfully built librosa matplotlib numpy audioread resampy
Failed to build scipy
ERROR: numba 0.48.0 has requirement numpy>=1.15, but you'll have numpy 1.14.3 which is incompatible.
Installing collected packages: python-mimeparse, falcon, inflect, audioread, joblib, numpy, llvmlite, numba, scipy, resampy, scikit-learn, librosa, cycler, matplotlib, tqdm, Unidecode
ERROR: Could not install packages due to an EnvironmentError: [Errno 13] Permission denied: '/usr/local/bin/falcon-bench'
Consider using the `--user` option or check the permissions.
DAMO238 commented
Use the following workaround: get rid of the version constraints on scipy, rerun pip3.7 -r requirements, that will give a different error but will install scipy, now for the final step pip3.7 install numpa. As of 2020-04-29, on Arch Linux, this will install successfully in a virtual environment using tensorflow 1.13.1 NOT the latest version as this repo depends on some keras.contrib stuff, which cannot be used in tensorflow 2.0.