kimrutherford
Programmer at the S. pombe genome database - @pombase (Dept. of Bichemistry, University of Cambridge)
Uni of Cambridge / @PomBaseDunedin, New Zealand
Pinned Repositories
bio-chado-schema
A standard DBIx::Class layer for the Chado database schema. Bootstrapped and updated using DBIx::Class::Schema::Loader.
bio-chado-view
A database layer and simple viewer for the Chado database schema
canto
The Pombase community curation tool
codecraft-ng-tut
EMBOSS
MIRROR OF: The European Molecular Biology Open Software Suite (from git://anonscm.debian.org/debian-med/emboss.git)
pombase-chado
PomBase code for accessing Chado
pombase-chado-json
Read a PomBase Chado database and write it as JSON
pombase-python-web
Python web code for the PomBase project
pomcur
Pombe community curation system
website
PomBase website v2
kimrutherford's Repositories
kimrutherford/EMBOSS
MIRROR OF: The European Molecular Biology Open Software Suite (from git://anonscm.debian.org/debian-med/emboss.git)
kimrutherford/microfft-rs
Embedded-friendly Fast Fourier Transforms in Rust - clone of https://gitlab.com/teskje/microfft-rs
kimrutherford/canto
The Pombase community curation tool
kimrutherford/kmr-bio-tools
Misc. bioinformatics tools
kimrutherford/pombase-chado-json
Read a PomBase Chado database and write it as JSON
kimrutherford/pombase-python-web
Python web code for the PomBase project
kimrutherford/rsame
Perl psame in Rust
kimrutherford/website
PomBase website v2
kimrutherford/allele_qc
Quality control for PomBase alleles
kimrutherford/biocontext
JSON-LD Contexts for Bioinformatics Data
kimrutherford/biopython
Official git repository for Biopython (originally converted from CVS)
kimrutherford/emacs-calfw
A calendar framework for Emacs
kimrutherford/genome_changelog
kimrutherford/go-ontology
Source ontology files for the Gene Ontology
kimrutherford/go-site
A collection of metadata, tools, and files associated with the Gene Ontology public web presence.
kimrutherford/japonicus-build
Build code for JaponicusDB
kimrutherford/japonicus-config
Configuration for JaponicusDB
kimrutherford/japonicus-data
Data files for JaponicusDB
kimrutherford/kimrutherford.github.io
kimrutherford/kmr.nz
kmr.nz
kimrutherford/obook
OBO Organized Knowledge: Training materials for becoming an OBO engineer
kimrutherford/ontology-access-kit
Ontology Access Kit: A python library and command line application for working with ontologies
kimrutherford/ontology-starter-kit
Bootstrap an OBO Library ontology
kimrutherford/pandoc-moderncv
Pandoc-ModernCV is a Pandoc facilities for typesetting modern curriculums vitae. Inspired by the well known Latex ModernCV, it is fairly customizable, allowing you to use predefined themes and to define your own style by changing colors, fonts, etc.
kimrutherford/phipo
Testing the Ontology Starter Kit
kimrutherford/pombase_rc_string
kimrutherford/rust-axum-course
Rust Axum Full Course code.
kimrutherford/rust-clib-example
example of writing a library that can be called from C or Rust
kimrutherford/visidata.org
the contents of the visidata website
kimrutherford/zoxide
A fast cd command that learns your habits