Pinned Repositories
HexStickers
LaIW20160427
2016/04/27に行われた、ライフ&インフォ女子の会の講義資料
Level1_3_R
細胞工学別冊 次世代シーケンサー Dry解析超入門 Level1 [3] Rの使い方で利用したソースコード
metaSeq
Meta-analysis package for RNA-seq count data
Pubmed_large
Pipeline for converting .xml to .sqlite of Pubmed (NML licensed)
SakigakeMTG2019
JSTさきがけ[多細胞]領域会議内のR講習会「Rでできる細胞間相互作用」で使用したソースコード
kokitsuyuzaki's Repositories
kokitsuyuzaki/metaSeq
Meta-analysis package for RNA-seq count data
kokitsuyuzaki/HexStickers
kokitsuyuzaki/scTensor-workshop
kokitsuyuzaki/TensorLyCV
Cross validation workflow of TensorLy
kokitsuyuzaki/snakemake-exercise
Snakemake tutorial for bioinformatics beginners
kokitsuyuzaki/BiocStickers
Stickers for some Bioconductor packages - feel free to contribute and/or modify.
kokitsuyuzaki/BuildABiocWorkshop
Template for building a bioconductor workshop package using github actions
kokitsuyuzaki/Chapter3_2
実験医学別冊 RNA-Seqデータ解析 3章(2) リファレンスゲノムにマッピングしない方法
kokitsuyuzaki/ChuoUniversity2022
Hands-on Materials
kokitsuyuzaki/Deconvolution-experiments
kokitsuyuzaki/Dockerfiles
Dockerfiles
kokitsuyuzaki/graphsim
R package: Simulate Expression data from igraph network using mvtnorm (CRAN; JOSS)
kokitsuyuzaki/Machima
Cross-omics Cell-type Deconvolution by Joint Non-negative Trifactorization
kokitsuyuzaki/MahaRank
Mahalanobis distance-based Plasmid-Host Ranking
kokitsuyuzaki/maharank-workflow
Snakemake workflow to generate the reference files for MahaRank
kokitsuyuzaki/pagoda2
R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets
kokitsuyuzaki/planets
kokitsuyuzaki/preprocess-exercise
kokitsuyuzaki/reductDims
Performs PCA and t-SNE
kokitsuyuzaki/reproducible-tools-exercise
kokitsuyuzaki/reproducible-tools-exercise-r
kokitsuyuzaki/singlecell-exercise100
kokitsuyuzaki/snakemake-sub-workflows-template
Snakemake workflow consisting of sub-worflows
kokitsuyuzaki/TensorProjects
kokitsuyuzaki/treefit-r
Treefit: R implementaion
kokitsuyuzaki/trybiocworkshop
test
kokitsuyuzaki/urchin-integration-workflow
Snakemake workflow to integrate multiple single-cell RNA-seq dataset of sea urchin
kokitsuyuzaki/urchin-workflow
Snakemake workflow to analyze the bulk RNA-seq dataset of sea urchin
kokitsuyuzaki/urchin-workflow2
Snakemake workflow to analyze the single-cell RNA-seq dataset of sea urchin
kokitsuyuzaki/urchin-workflow3
Snakemake workflow to analyze the single-cell RNA-seq dataset of sea urchin