konradjk/loftee

Fail to instantiate plugin LoF

Opened this issue · 1 comments

Hi ,
I am having the following error:

WARNING: Plugin 'LoF' went wrong: Can't locate object method "prepare" via package "false" (perhaps you forgot to load "false"?) at /home/ec2-user/.vep/Plugins/gerp_dist.pl line 129, <ANONIO> line 53522.

I have seen this issue in a previous post, but was unresolved.

Is there any assistance on this please?

Thanks in advance,
Nuno

could resolve by giving the conservation_file path in the command line as worked in my example ./vep --plugin LoF,loftee_path:/Tools/ensembl-vep/loftee,human_ancestor_fa:/SupportFiles/vep/LOFTEE/human_ancestor.fa.gz,phylocsf_data:/SupportFiles/vep/LOFTEE/phylocsf_gerp.sql . Hope this help!