conflict between gnomAD and loftee
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vserret commented
Hi,
Many congrats with the nature papers, and a big thanks for all your inspiring work.
I have an issue using LOFTEE with several variants (rs601338, rs11310407) annotated as LC (END_TRUNC) on my hg38-WES data but (rightly I presume) designated as HC on gnomAD.
I did run LOFTEE without any options so I assume the filter_position =0.05 by default.
Thank you for your help on this !