ksamuk/pixy

csi index

giuliafrascarelli opened this issue · 3 comments

giuliafrascarelli commented

Hi!
First, thank you for the nice program!

I am currently working with lentil WGS data and the vcf cannot be tbi indexed but I found that Pixy does not support the csi index.
There is a way to solve the problem or do you have any suggestions?

Thanks!
Giulia

ksamuk commented

Hi Giulia, there isn't currently support for .csi indexes, but I'd like to add it in a future update. The only way around this currently would be to split your VCF into smaller chunks and re-index with .tbi.

  • 👍1
xiekunwhy commented

Hi,

Also request for csi indexes supporting.

Best,
Kun

Jolvii85 commented

Hi,

Request for csi index supporting.

Best,

Wei