Issues
- 2
- 1
Broken link in the README
#148 opened by k3yavi - 5
Error in postalign_xcor.bds', line 102
#135 opened by beckedorff - 3
genome hg38 install
#145 opened by danxunLi - 3
source activate fail
#147 opened by yinshiyi - 1
Location of cromwell-34.jar
#146 opened by imk1 - 3
- 1
mm10 vs Grcm38(Gencode)
#143 opened by pdellorusso - 4
trouble installing genome data for mm10
#142 opened by eunsolp - 16
Can I install this ATAC-pipeline in Mac?
#132 opened by llz-hiv - 1
How to cite this ppeline
#140 opened by sjn7 - 2
Error during ataqc step "IOError: File [xxx]R1.trim.merged.signal does not exist"
#136 opened by Chokaro - 2
error running on DNANexus platform
#137 opened by llz-hiv - 4
differences between "new" and "old" pipeline
#139 opened by computbiolgeek - 1
- 24
Data set
#126 opened by rehamFatima - 11
- 1
Steps between pipeline and diffE
#129 opened by raboul101 - 0
Input bams of multiple true replicates
#133 opened by anthonyjpayne - 1
Fatal error: atac.bds, line 1200, pos 2. Task/s failed....during peakcalling
#134 opened by grrompala - 9
SCG SLURM hg38 permissions error?
#130 opened by mkdegorter - 25
Error : Creating checkpoint file
#128 opened by rehamFatima - 1
- 1
Compile error for atac.bds
#127 opened by DuYushen - 1
Java memory issue
#124 opened by ahorn720 - 1
- 4
error in loading caTools
#122 opened by timydaley - 4
- 9
queue option on Sherlock
#120 opened by timydaley - 3
stops at idr2
#119 opened by ahorn720 - 3
- 2
annotate peaks produced by this pipeline
#112 opened by llz-hiv - 4
Installing genomes from local source.
#107 opened by am33567 - 1
Trouble Installing
#104 opened by ahorn720 - 2
- 1
fail at run_ataqc.py
#99 opened by yinshiyi - 2
Is there any difference between Conservative Set and Optimal Set of peaks?
#117 opened by amirshams84 - 1
Removing Mitochondrial hits is not consistent between replicate and pseudo replicates
#116 opened by amirshams84 - 4
- 3
broadpeak calling is off
#114 opened by fanying2015 - 1
FRiP calculation absent
#113 opened by am33567 - 6
Error in postalign_xcor.bds line 98
#111 opened by am33567 - 3
sbatch: error: unable to open file [account]
#110 opened by odegoede - 1
- 1
java.lang.IndexOutOfBoundsException
#108 opened by am33567 - 5
- 3
issue on bowtie index2 is missing
#100 opened by hongchaoguo - 2
Bowtie2 mem error? qsub , SGE
#106 opened by Ruismart - 12
Can't kill a non-numeric process ID at /home/mycount/.bds/clusterGeneric/run.pl line 30
#102 opened by llz-hiv - 4
Error with adapter auto detection
#103 opened by easwaranramamurthy