Using chrombpnet for STARR-Seq data

[otastet]

Hi,
First of all thank you very much for this valuable tool. We have used it already for ATAC-Seq data alongside the variant effect prediction.
I wanted to know your thoughts on using it with STARR-Seq, a functional assay that quantifies enhancer strengths. We are particularly interested in estimating the effect of variants on the enhancer signals.

Thank you very much.

[panushri25]

Hello @otastet, Our lab is working on related architecture specific to STARR-seq but it is currently under development and will be released soon. So please check back later. Thank you!