kundajelab/chrombpnet

Error with convert_html_to_pdf

Opened this issue · 1 comments

Getting the following error when running both chrombpnet bias-pipeline and chrombpnet pipeline commands on the lab cluster.

import chrombpnet.evaluation.modisco.convert_html_to_pdf as convert_html_to_pdf
  File "/users/vir/anaconda3/envs/chrombpnet_new/lib/python3.8/site-packages/chrombpnet/evaluation/modisco/convert_html_to_pdf.py", line 1, in <module>
    from weasyprint import HTML, CSS
  File "/users/vir/anaconda3/envs/chrombpnet_new/lib/python3.8/site-packages/weasyprint/__init__.py", line 469, in <module>
    from .css import preprocess_stylesheet  # noqa isort:skip
  File "/users/vir/anaconda3/envs/chrombpnet_new/lib/python3.8/site-packages/weasyprint/css/__init__.py", line 27, in <module>
    from . import computed_values, counters, media_queries
  File "/users/vir/anaconda3/envs/chrombpnet_new/lib/python3.8/site-packages/weasyprint/css/computed_values.py", line 15, in <module>
    from .. import text
  File "/users/vir/anaconda3/envs/chrombpnet_new/lib/python3.8/site-packages/weasyprint/text.py", line 258, in <module>
    gobject = dlopen(ffi, 'gobject-2.0', 'libgobject-2.0-0', 'libgobject-2.0.so.0',
  File "/users/vir/anaconda3/envs/chrombpnet_new/lib/python3.8/site-packages/weasyprint/text.py", line 255, in dlopen
    return ffi.dlopen(names[0])  # pragma: no cover
  File "/users/vir/anaconda3/envs/chrombpnet_new/lib/python3.8/site-packages/cffi/api.py", line 150, in dlopen
    lib, function_cache = _make_ffi_library(self, name, flags)
  File "/users/vir/anaconda3/envs/chrombpnet_new/lib/python3.8/site-packages/cffi/api.py", line 832, in _make_ffi_library
    backendlib = _load_backend_lib(backend, libname, flags)
  File "/users/vir/anaconda3/envs/chrombpnet_new/lib/python3.8/site-packages/cffi/api.py", line 828, in _load_backend_lib
    return backend.load_library(path, flags)
OSError: cannot load library 'libgobject-2.0.so.0': /usr/lib/x86_64-linux-gnu/libgobject-2.0.so.0: undefined symbol: ffi_type_uint32, version LIBFFI_BASE_7.0

Thanks
Vivek

This seems to be a library issue, did you ask Anna if this is a core library @viramalingam