kundajelab/dfim

Environment of embedded_motif_interaction_example tutorial

mkojima123 opened this issue · 1 comments

Hi,

https://github.com/kundajelab/dfim/blob/master/examples/embedded_motif_interaction_example.ipynb
I tried running this tutorial and I always get an error during Load model.

model = model_from_json(model_json)

Please let me know python, keras, tensorflow version when this tutorial worked.

Thank you.

t-l-g commented

Description

I am trying to replicate the notebook as well and get ValueErrors in the JSON file loading the model.

Screenshots

Screen Shot 2022-12-31 at 13 33 05

Screen Shot 2022-12-31 at 13 33 18

Screen Shot 2022-12-31 at 13 33 28

model_weights = '../data/embedded_motif_interaction_data/model_weights.h5'
model_architecture = '../data/embedded_motif_interaction_data/model_architecture.json'

Simply running the above cell produces this error after cloning the repo.