Testing on PPPL cluster

[lazersos]

@landreman I was able to build and link on the PPPL cluster. The code seems to run through the test cases correctly but then the test.py has issues with the netcdf file.

sunfire05:778 ls
regcoil_in.lambda_search_1  regcoil_out.lambda_search_1.nc  tests.py
sunfire05:779 ./tests.py
ERROR! Unable to read netCDF output file regcoil_out.lambda_search_1.nc
Traceback (most recent call last):
  File "./tests.py", line 13, in <module>
    f = readOutputFile()
  File "../testsCommon.py", line 13, in readOutputFile
    f = netcdf.netcdf_file(outputFilename,'r',mmap=False)
TypeError: __init__() got an unexpected keyword argument 'mmap'

[lazersos]

Should have read the error more carefully. The issue was the mmap argument. I suspect I'm just using an older version of scipy. Anyway, all tests passed now. I think this issue can be marked as resolved.

[landreman]

Neil Pomphrey mentioned a similar issue a while back. The solution was to load the anaconda module, which includes an up-to-date version of scipy.

…

On Sat, Feb 17, 2018 at 2:50 AM, Samuel Lazerson ***@***.***> wrote: Should have read the error more carefully. The issue was the mmap argument. I suspect I'm just using an older version of scipy. Anyway, all tests passed now. I think this issue can be marked as resolved. — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub <#2 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AE_Mg5hv76kePfERwoGve4-oRwfURileks5tVoTjgaJpZM4SJOo-> .

-- ======================================= Dr. Matt Landreman Associate Research Scientist Institute for Research in Electronics & Applied Physics University of Maryland 8223 Paint Branch Drive, College Park MD 20742, USA (+1) 651-366-9306 mattland@umd.edu