GATE to LIF converter not working when GATE app called
Opened this issue · 1 comments
Works if I convert manually.
Applying GATE Tokenizer to this document:
metadata" : {
"sourceid" : "3333881",
"docid" : "PMC:3333881:17",
"divid" : 17,
"sourcedb" : "PMC",
"target" : "http://pubannotation.org/docs/sourcedb/PMC/sourceid/3333881/divs/17",
"namespaces" : {
"prefix" : [ "_base" ],
"uri" : [ "http://bionlp.dbcls.jp/ontology/ge.owl#" ]
}
Error:
{"discriminator":"http://vocab.lappsgrid.org/ns/error","payload":"Unable to execute the Tokenizer.\norg.lappsgrid.api.InternalException: Unknown document type : http://vocab.lappsgrid.org/ns/media/jsonld#lif\n\tat org.anc.lapps.gate.SimpleGateService.getDocument(SimpleGateService.java:316)\n\tat org.anc.lapps.gate.SimpleGateService.doExecute(SimpleGateService.java:249)\n\tat org.anc.lapps.gate.SimpleGateService.doExecute(SimpleGateService.java:274)\n\tat org.anc.lapps.gate.SimpleGateService.doExecute(SimpleGateService.java:264)\n\tat org.anc.lapps.gate.Tokenizer.execute(Tokenizer.java:36)\n\tat sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)\n\tat sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)\n\tat sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)\n\tat java.lang.reflect.Method.invoke(Method.java:498)\n\tat jp.go.nict.langrid.servicecontainer.decorator.ServiceInvoker.invoke(ServiceInvoker.java:39)\n\tat jp.go.nict.langrid.servicecontainer.decorator.FirstDecoratorChain.next(FirstDecoratorChain.java:49)\n\tat jp.go.nict.langrid.servicecontainer.handler.ServiceInvocationHandler.invoke(ServiceInvocationHandler.java:29)\n\tat com.sun.proxy.$Proxy702.execute(Unknown Source)\n\tat sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)\n\tat sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)\n\tat sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)\n\tat java.lang.reflect.Method.invoke(Method.java:498)\n\tat org.apache.axis.providers.java.RPCProvider.invokeMethod(RPCProvider.java:397)\n\tat org.apache.axis.providers.java.RPCProvider.processMessage(RPCProvider.java:186)\n\tat jp.go.nict.langrid.servicecontainer.handler.axis.SGJavaProvider.processMessage(SGJavaProvider.java:163)\n\tat org.apache.axis.providers.java.JavaProvider.invoke(JavaProvider.java:323)\n\tat org.apache.axis.strategies.InvocationStrategy.visit(InvocationStrategy.java:32)\n\tat org.apache.axis.SimpleChain.doVisiting(SimpleChain.java:118)\n\tat org.apache.axis.SimpleChain.invoke(SimpleChain.java:83)\n\tat org.apache.axis.handlers.soap.SOAPService.invoke(SOAPService.java:454)\n\tat org.apache.axis.server.AxisServer.invoke(AxisServer.java:281)\n\tat org.apache.axis.transport.http.AxisServlet.doPost(AxisServlet.java:699)\n\tat javax.servlet.http.HttpServlet.service(HttpServlet.java:646)\n\tat org.apache.axis.transport.http.AxisServletBase.service(AxisServletBase.java:327)\n\tat jp.go.nict.langrid.servicecontainer.handler.axis.SGAxisServlet.service(SGAxisServlet.java:169)\n\tat javax.servlet.http.HttpServlet.service(HttpServlet.java:727)\n\tat org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:303)\n\tat org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)\n\tat org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52)\n\tat org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241)\n\tat org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)\n\tat org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:220)\n\tat org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:122)\n\tat org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:501)\n\tat org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:170)\n\tat org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:98)\n\tat org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:950)\n\tat org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:116)\n\tat org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:408)\n\tat org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1040)\n\tat org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:607)\n\tat org.apache.tomcat.util.net.AprEndpoint$SocketWithOptionsProcessor.run(AprEndpoint.java:2378)\n\tat java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)\n\tat java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)\n\tat java.lang.Thread.run(Thread.java:748)\n"}