Re-run STAR aligner using Dungeness crab and MEGAN-scrubbed RNASeq data
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laurahspencer commented
@ggoetznoaa get scrubbed RNASeq data from @kubu4
kubu4 commented
Alrighty, read extractions have been performed.
FastQs are here (*.fq.gz
):
MD5 checksums file:
Notebook:
@ggoetznoaa - Here's a direct link to Jupyter Notebook (NB Viewer) on how to use MEGAN FastAs to get corresponding reads from original FastQs. Let me know if you have any questions/concerns!
ggoetznoaa commented
Ran this using the script run.star_align_megan6_gensas.v1.sh, alignment stats found in spreadsheet under tab "STAR MEGAN6 GENSAS"