leekgroup/derfinder

Error in countReads.py

Closed this issue · 2 comments

samirwadhawan commented

I have tried running it multiple times and this is the error I am receiving.

Traceback (most recent call last):
File "countReads.py", line 144, in
countReadlets(options.file, options.output, options.kmer, options.chrom, stranded)
TypeError: countReadlets() takes exactly 4 arguments (5 given)

seems like 'strand' is missing in def of countReadlets() . Also noticed that in the last line of the code all arguments have options.argument while stranded does not.

countReadlets(options.file, options.output, options.kmer, options.chrom, stranded)

alyssafrazee commented

fixed (added "stranded" to def of countReadlets).

alyssafrazee commented

also, note that this functionality will likely be available soon in the efficient version of derfinder, so stay tuned to that repo as well.