Pinned Repositories
cfDNA-ULP_WGS
This is for the project of ultra-low-pass whole genome sequencing of cfDNA
ILC-Immune-Infiltration
ILC-Survey
ILC Survey Text Analysis
jamaOncology_2016
Reproduce figures from doi:10.1001/jamaoncol.2016.5630, Intrinsic Subtype Switching and Acquired ERBB2/HER2 Amplifications and Mutations in Breast Cancer Brain Metastases, Adrian Lee Lab
jciInsight_2017
Exome-capture RNA-sequencing of decade-old breast cancers and matched decalcified bone metastases, doi: 10.1172/jci.insight.95703
jnci_2018
Recurrent gains in RET and HER2 signaling represent clinically actionable targets in breast cancer brain metastases
npjBreast_2019
FGFR4 overexpression and hotspot mutations in metastatic ER+ breast cancer are enriched in the lobular subtype
RatAgingWES
Github repository for code used to analyze whole exome sequencing data from older and younger rat tumors.
scRNA-CellLines
single cell RNA sequencing of 8 breast cancer cell lines
shiny-server
Lee Oesterreich Lab's Repositories
leeoesterreich/scRNA-CellLines
single cell RNA sequencing of 8 breast cancer cell lines
leeoesterreich/jamaOncology_2016
Reproduce figures from doi:10.1001/jamaoncol.2016.5630, Intrinsic Subtype Switching and Acquired ERBB2/HER2 Amplifications and Mutations in Breast Cancer Brain Metastases, Adrian Lee Lab
leeoesterreich/cfDNA-ULP_WGS
This is for the project of ultra-low-pass whole genome sequencing of cfDNA
leeoesterreich/ILC-Immune-Infiltration
leeoesterreich/ILC-Survey
ILC Survey Text Analysis
leeoesterreich/jciInsight_2017
Exome-capture RNA-sequencing of decade-old breast cancers and matched decalcified bone metastases, doi: 10.1172/jci.insight.95703
leeoesterreich/jnci_2018
Recurrent gains in RET and HER2 signaling represent clinically actionable targets in breast cancer brain metastases
leeoesterreich/npjBreast_2019
FGFR4 overexpression and hotspot mutations in metastatic ER+ breast cancer are enriched in the lobular subtype
leeoesterreich/RatAgingWES
Github repository for code used to analyze whole exome sequencing data from older and younger rat tumors.
leeoesterreich/shiny-server
leeoesterreich/BRCA_OlderWomen_BulkRNAseq
Bulk RNA-seq data analysis to run GSVA and PROGENy
leeoesterreich/BRCA_Rat_YoungerOlder_snRNAseq
leeoesterreich/DRGEXCOBRA
DNA repair gene expression correlation with TFAP2B in BRCA data
leeoesterreich/ERpBRCA_OlderWomen
Chronic inflammation and hormone disposition promote a tumor-permissive locale for breast cancer in older women
leeoesterreich/GEXPLORER
leeoesterreich/mDLC_Spatial_Analysis_2023
Spatial molecular profiling of mixed invasive ductal-lobular breast cancers reveals heterogeneity in intrinsic molecular subtypes, oncogenic signatures, and mutations
leeoesterreich/Structural-Variant-analysis
leeoesterreich/Tendo_cfDNA_Fusion_capture
leeoesterreich/THU-Bell
THU Bell on macOS