Python script problem on Mac OSX
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GoogleCodeExporter commented
What steps will reproduce the problem?
1. The program was untared in /Applications/XDS-OSX_Intel and this folder was
then sourced in .bash_login. Xcode and X11 are fully up-to-date but when xdsme
is executed there is a problem with python scrip subprocess.py. I have tried
copying this python script from Phenix, but this did not work either.
2.
3.
What is the expected output? What do you see instead?
I would expect XDS to run to completion, however I get the following.
Jamies-MacBook-Pro:Compound_5_19h_10sec Jamie$ xdsme
/Users/Jamie/Documents/Crystallography/Compound_5_19h_10sec/Compound_5_19h_10s_4
5mm_025oci_15012013_????.img
>> Interpreting header of image:
/Users/Jamie/Documents/Crystallography/Compound_5_19h_10sec/Compound_5_19h_10s_4
5mm_025oci_15012013_0001.img
>> Image format: mscccd
Simplified XDS Processing
xdsme version: 0.5.0-beta1
/bin/sh: xds_par: command not found
xds version:
Diffraction Setup Parameters:
Detector distance: -45.00 mm
X-ray wavelength: 1.5418 A
Oscillation range: 0.2500 degree
Beam coordinate X: 523.1 pixel
Y: 538.4 pixel
Image range: [1, 720]
Selected resolution range: 50.00 - 2.18 A
Number of processors available: 8
Traceback (most recent call last):
File "/Applications/XDS-OSX_Intel/xdsme-0.5beta1/bin/noarch/xdsme", line 1751, in <module>
R1 = newrun.run_init()
File "/Applications/XDS-OSX_Intel/xdsme-0.5beta1/bin/noarch/xdsme", line 872, in run_init
self.run(rsave=True)
File "/Applications/XDS-OSX_Intel/xdsme-0.5beta1/bin/noarch/xdsme", line 765, in run
xdsProcess = self._creat_process(self.__execfile)
File "/Applications/XDS-OSX_Intel/xdsme-0.5beta1/bin/noarch/xdsme", line 712, in _creat_process
universal_newlines=True)
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/subprocess.py", line 679, in __init__
errread, errwrite)
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/subprocess.py", line 1249, in _execute_child
raise child_exception
OSError: [Errno 2] No such file or directory
What version of the product are you using? On what operating system?
I'm using April 2012 version with a MacBook Pro 2.3 GHz Intel Core i7, OSX
10.8.2
Please provide any additional information below.
Thanks.
Original issue reported on code.google.com by jamiemar...@gmail.com
on 16 Jan 2013 at 5:29