error: package directory 'mimic_fhir_transform' does not exist
banderlog opened this issue · 0 comments
banderlog commented
Installation attempt throws an error:
bkaba@localhost:~/MIMIC-III_FHIR_Transformation$ ./venv/bin/pip install -e .
Obtaining file:///home/bkaba/MIMIC-III_FHIR_Transformation
ERROR: Command errored out with exit status 1:
command: /home/bkaba/MIMIC-III_FHIR_Transformation/venv/bin/python3.8 -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/home/bkaba/MIMIC-III_FHIR_Transformation/setup.py'"'"'; __file__='"'"'/home/bkaba/MIMIC-III_FHIR_Transformation/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' egg_info --egg-base /tmp/pip-pip-egg-info-juligi53
cwd: /home/bkaba/MIMIC-III_FHIR_Transformation/
Complete output (10 lines):
running egg_info
creating /tmp/pip-pip-egg-info-juligi53/mimic_fhir_transfrom.egg-info
writing /tmp/pip-pip-egg-info-juligi53/mimic_fhir_transfrom.egg-info/PKG-INFO
writing dependency_links to /tmp/pip-pip-egg-info-juligi53/mimic_fhir_transfrom.egg-info/dependency_links.txt
writing requirements to /tmp/pip-pip-egg-info-juligi53/mimic_fhir_transfrom.egg-info/requires.txt
writing top-level names to /tmp/pip-pip-egg-info-juligi53/mimic_fhir_transfrom.egg-info/top_level.txt
writing manifest file '/tmp/pip-pip-egg-info-juligi53/mimic_fhir_transfrom.egg-info/SOURCES.txt'
/usr/lib/python3.8/distutils/dist.py:274: UserWarning: Unknown distribution option: 'extras_requires'
warnings.warn(msg)
error: package directory 'mimic_fhir_transform' does not exist
----------------------------------------
WARNING: Discarding file:///home/bkaba/MIMIC-III_FHIR_Transformation. Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output.
ERROR: Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output.
Dir structure:
bkaba@localhost:~$ tree MIMIC-III_FHIR_Transformation/ -L 1
MIMIC-III_FHIR_Transformation/
├── mimic_fhir_transfrom
├── README.md
├── setup.py
└── venv
Python 3.8.8